abc_smc_process: Processes ABC-SMC Slurm Simulation Output and Selects Next...
In EpiModel/EasyABCMPI: Approximate Bayesian Computation for EpiModel on High-Performance Computing Clusters
Description
This is the fourth step in the ABC-SMC Slurm workflow.
Usage
1
abc_smc_process(input = "data/", wave, save = TRUE, outdir = "data/")
Arguments
input
A character string containing the directory of the output file
from abc_smc_prep which should be saved as an RDS file
with the name abc.wave0.rda (the default), or the object itself.
wave
SMC wave number, where the initial wave = 0. In the standard Slurm
workflow, this would get passed in as an environmental variable
wave from the master bash script.
save
If TRUE, writes output to an RDS file with the name
abc.waveX.batchY.rda in the directory specified by outdir,
where X is the value of wave and Y is the value
of batch.
outdir
Path to save the output RDS file if save=TRUE.
EpiModel/EasyABCMPI documentation built on Dec. 5, 2020, 8:43 p.m.
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Description
This is the fourth step in the ABC-SMC Slurm workflow.
Usage
1 | abc_smc_process(input = "data/", wave, save = TRUE, outdir = "data/")
|
Arguments
input |
A character string containing the directory of the output file
from |
wave |
SMC wave number, where the initial wave = 0. In the standard Slurm
workflow, this would get passed in as an environmental variable
|
save |
If |
outdir |
Path to save the output RDS file if |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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