step_tmpl_bash_script: Step Template to Run a Bash Script

In EpiModel/slurmworkflow: Build workflows for the Slurm workload manager

Step Template to Run a Bash Script

Description

Step Template to Run a Bash Script

Usage

step_tmpl_bash_script(bash_script)

Arguments

bash_script

Path to the script to be run by the workflow step

Value

a template function to be used by add_workflow_step

Step Template

Step Templates are helper functions to be used within add_workflow_step. Some basic ones are provided by the slurmworkflow package. They instruct the workflow to run either a bash script, a set of bash lines given as a character vector or an R script. Additional Step Templates can be created to simplify specific tasks. The easiest way to do so is as wrappers around existing templates.

EpiModel/slurmworkflow documentation built on Nov. 8, 2023, 1:23 a.m.