Description Usage Arguments Value
View source: R/growth-parameters.R
Calculates colony growth parameters by fitting a smooth growth curve using
smooth.spline
.
1 | growth_parameters(time, size, ...)
|
time |
Numeric - time of growth. |
size |
Numeric - size of colony. |
... |
Further arguments passed to |
Returns a data frame with the following parameters derived from the fit curve:
A | Maximum growth. |
A_t | Time at maximum growth. |
mu | Maximum growth rate. |
mu_t | Time at maximum growth rate. |
mu_y | Growth at maximum growth rate. |
lambda | Lag phase (x-intercept of line tangent to max growth rate). |
b | y-intercept of line tangent to max growth rate. |
integral | Area under growth curve. |
spar | Smoothing parameter used to generate curve - can be
set by passing a spar argument to
smooth.spline .
|
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