| change_genotype_to_frequency | change_allele_to_requencies | 
| check_object_or_file | check_object_or_file | 
| covariate_test_data | Example of a covariate data set. | 
| gencode_position | Gene positions. | 
| generate_test_data | Generate test data | 
| genotype_test_data | Example of a genotype data set. | 
| genotype_test_locations | Example of a genotype position data set. | 
| gepo | Genotype positions. | 
| get_os | Determine the current operating system. | 
| init_basic_directories | Creates initial file structure for leqtar output. | 
| leqtar | Leqtar | 
| leqtar_analysis | leqtar_analysis function | 
| leqtar_create_genotype_boxplots | leqtar_create_genotype_boxplots | 
| leqtar_create_manhattan_plots | leqtar_create_manhattan_plots | 
| leqtar_genotypes_to_frequencies | leqtar_genotypes_to_frequencies | 
| leqtar_process_files | leqtar_process_files function | 
| leqtar_results | leqtar_results | 
| phenotype_test_data | Example of a phenotype position data set. | 
| phenotype_test_locations | Example of a phenotype data set. | 
| prepare_df_qtls | prepare_df_qtls | 
| process_arguments | Processes the user input arguments | 
| read_files | read_files function | 
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