createTsneSlides: Create slides of tsne process for use in animations

Description Usage Arguments

View source: R/createTsneSlides.R

Description

This function allows user to plot cluster results from a PAM object using t-distributed stochastic neighborhood embedding. Several slides are created based on the number of iterations specified. E.g. If you specify 1000 iterations, the slides created will be tsne results from 1, 10, 20, 30, 40, and so on up to 1000 iterations.

Usage

1
createTsneSlides(df, gowerDiss, id, pam_fit, iterations)

Arguments

df

Data frame from which dissimilarities were calculated

gowerDiss

gower dissimilarities to use

id

ids from original data

pam_fit

PAM object from building a PAM clustering model

iterations

Number of iterations for tsne


EthanTaft/clusteringTables documentation built on Sept. 15, 2017, 10:42 a.m.