createTsneSlides: Create slides of tsne process for use in animations

In EthanTaft/clusteringTables: Clusters >>> Smaller Groups

Description

This function allows user to plot cluster results from a PAM object using t-distributed stochastic neighborhood embedding. Several slides are created based on the number of iterations specified. E.g. If you specify 1000 iterations, the slides created will be tsne results from 1, 10, 20, 30, 40, and so on up to 1000 iterations.

Usage

createTsneSlides(df, gowerDiss, id, pam_fit, iterations)

Arguments

df	Data frame from which dissimilarities were calculated
gowerDiss	gower dissimilarities to use
id	ids from original data
pam_fit	PAM object from building a PAM clustering model
iterations	Number of iterations for tsne

EthanTaft/clusteringTables documentation built on May 3, 2019, 9:02 p.m.