| $ |
Man page
|
| $,FAData-method |
Man page
|
| $,FAIncidenceRateResults-method |
Man page
|
| $,FAStdIncidenceRateResults-method |
Man page
|
| .FR |
Source code
|
| .FRSimulation |
Source code
|
| .binom.test |
Source code
|
| .binomialTest |
Source code
|
| .bracketSubset |
Source code
|
| .checkHaplopaintRequirements |
Source code
|
| .checkLabels |
Source code
|
| .checkRowindex |
Source code
|
| .fileExtension |
Source code
|
| .genIndex |
Source code
|
| .onAttach |
Source code
|
| .onLoad |
Source code
|
| .pbinom.test |
Source code
|
| .removeSingletons |
Source code
|
| .setOptions |
Source code
|
| .validateFABinTestResults |
Source code
|
| FABinTestResults |
Man page
|
| FABinTestResults-class |
Man page
|
| FAData |
Man page
Source code
|
| FAData-class |
Man page
|
| FAGenIndexResults |
Man page
|
| FAGenIndexResults-class |
Man page
|
| FAIncidenceRateResults |
Man page
|
| FAIncidenceRateResults-class |
Man page
|
| FAKinGroupResults |
Man page
|
| FAKinGroupResults-class |
Man page
|
| FAKinSumResults |
Man page
|
| FAKinSumResults-class |
Man page
|
| FAProbResults |
Man page
|
| FAProbResults-class |
Man page
|
| FAStdIncidenceRateResults |
Man page
|
| FAStdIncidenceRateResults-class |
Man page
|
| PedigreeAnalysis |
Man page
|
| PedigreeUtils |
Man page
|
| [,FABinTestResults,ANY,ANY,ANY-method |
Man page
|
| [,FABinTestResults,ANY-method |
Man page
|
| [,FAData,ANY,ANY,ANY-method |
Man page
|
| [,FAData,ANY-method |
Man page
|
| [,FAGenIndexResults,ANY,ANY,ANY-method |
Man page
|
| [,FAGenIndexResults,ANY-method |
Man page
|
| [,FAIncidenceRateResults,ANY,ANY,ANY-method |
Man page
|
| [,FAIncidenceRateResults,ANY-method |
Man page
|
| [,FAKinGroupResults,ANY,ANY,ANY-method |
Man page
|
| [,FAKinGroupResults,ANY-method |
Man page
|
| [,FAKinSumResults,ANY,ANY,ANY-method |
Man page
|
| [,FAKinSumResults,ANY-method |
Man page
|
| [,FAProbResults,ANY,ANY,ANY-method |
Man page
|
| [,FAProbResults,ANY-method |
Man page
|
| [,FAStdIncidenceRateResults,ANY,ANY,ANY-method |
Man page
|
| [,FAStdIncidenceRateResults,ANY-method |
Man page
|
| affectedIndividuals |
Man page
|
| affectedIndividuals,FAData-method |
Man page
|
| affectedKinshipGroups |
Man page
|
| affectedKinshipGroups,FAKinGroupResults-method |
Man page
|
| age |
Man page
|
| age,FAData-method |
Man page
|
| age<- |
Man page
|
| age<-,FAData-method |
Man page
|
| bg.ks.distr |
Source code
|
| bg.ks.distr.strat |
Source code
|
| binomialTest |
Man page
Source code
|
| buildHaplopaintDataframe |
Source code
|
| buildPed |
Man page
|
| buildPed,FAData-method |
Man page
|
| buildPed,FAKinGroupResults-method |
Man page
|
| buildPed,FAProbResults-method |
Man page
|
| buildPedigree |
Source code
|
| checkArgAreTwins |
Source code
|
| checkArgConsanguineous |
Source code
|
| checkArgNumericLogical |
Source code
|
| checkPedCol |
Source code
|
| checkTransformNumeric |
Source code
|
| cliqueAndTrait |
Man page
|
| cliqueAndTrait,FAProbResults-method |
Man page
|
| cliques |
Man page
|
| cliques,FAProbResults-method |
Man page
|
| cliques,missing-method |
Man page
|
| cliques<- |
Man page
|
| cliques<-,FAProbResults-method |
Man page
|
| connectedSubgraph |
Man page
Source code
|
| countGenerations |
Man page
|
| countGenerations,FAData-method |
Man page
|
| countGenerations,data.frame-method |
Man page
|
| countGenerations,pedigree-method |
Man page
|
| countGenerations,pedigreeList-method |
Man page
|
| define.result.groups.ks |
Source code
|
| df2ped |
Source code
|
| doCountGenerations |
Source code
|
| doEstimateGenerationsFor2 |
Source code
|
| doFindFounders |
Source code
|
| doFindFoundersForId |
Source code
|
| doFsir |
Source code
|
| doFsirSimulation |
Source code
|
| doGetAll |
Source code
|
| doGetAncestors |
Source code
|
| doGetChildren |
Source code
|
| doGetCommonAncestor |
Source code
|
| doGetExternalMatched |
Source code
|
| doGetFounders |
Source code
|
| doGetGenerationFrom2 |
Source code
|
| doGetGenerationMatched |
Source code
|
| doGetGenerationSexMatched |
Source code
|
| doGetMissingMate |
Source code
|
| doGetParents |
Source code
|
| doGetSexMatched |
Source code
|
| doGetSiblings |
Source code
|
| doGetSingletons |
Source code
|
| doImport |
Source code
|
| doImportFam |
Source code
|
| doImportGeneric |
Source code
|
| doImportPed |
Source code
|
| doPlotPed |
Man page
Source code
|
| doProcessDf2Ped |
Source code
|
| doProcessPed2Df |
Source code
|
| doPrunePed |
Source code
|
| doShareKinship |
Source code
|
| estimateGenerations |
Man page
|
| estimateGenerations,FAData-method |
Man page
|
| estimateGenerations,data.frame-method |
Man page
|
| estimateGenerations,pedigree-method |
Man page
|
| estimateGenerations,pedigreeList-method |
Man page
|
| estimateTimeAtRisk |
Man page
Source code
|
| export |
Man page
|
| export,FAData-method |
Man page
|
| factor2matrix |
Man page
Source code
|
| familialIncidenceRate |
Man page
|
| familialIncidenceRate,FAData-method |
Man page
|
| familialIncidenceRate,FAIncidenceRateResults-method |
Man page
|
| familialIncidenceRateTest |
Man page
|
| familialIncidenceRateTest,FAData-method |
Man page
|
| family |
Man page
|
| family,FAData-method |
Man page
|
| findFounders |
Man page
|
| findFounders,FAData-method |
Man page
|
| findFounders,data.frame-method |
Man page
|
| findFounders,pedigree-method |
Man page
|
| findFounders,pedigreeList-method |
Man page
|
| fsir |
Man page
|
| fsir,FAData-method |
Man page
|
| fsir,FAStdIncidenceRateResults-method |
Man page
|
| fsirTest |
Man page
|
| fsirTest,FAData-method |
Man page
|
| genealogicalIndexTest |
Man page
|
| genealogicalIndexTest,FAData-method |
Man page
|
| generationsFrom |
Man page
|
| generationsFrom,FAData-method |
Man page
|
| generationsFrom,data.frame-method |
Man page
|
| generationsFrom,pedigree-method |
Man page
|
| generationsFrom,pedigreeList-method |
Man page
|
| getAll |
Man page
|
| getAll,FAData-method |
Man page
|
| getAll,data.frame-method |
Man page
|
| getAll,pedigree-method |
Man page
|
| getAll,pedigreeList-method |
Man page
|
| getAllSibsNMates |
Source code
|
| getAncestors |
Man page
|
| getAncestors,FAData-method |
Man page
|
| getAncestors,data.frame-method |
Man page
|
| getAncestors,pedigree-method |
Man page
|
| getAncestors,pedigreeList-method |
Man page
|
| getChildren |
Man page
|
| getChildren,FAData-method |
Man page
|
| getChildren,data.frame-method |
Man page
|
| getChildren,pedigree-method |
Man page
|
| getChildren,pedigreeList-method |
Man page
|
| getCommonAncestor |
Man page
|
| getCommonAncestor,FAData-method |
Man page
|
| getCommonAncestor,data.frame-method |
Man page
|
| getCommonAncestor,pedigree-method |
Man page
|
| getCommonAncestor,pedigreeList-method |
Man page
|
| getExternalMatched |
Man page
|
| getExternalMatched,FAData-method |
Man page
|
| getExternalMatched,data.frame-method |
Man page
|
| getExternalMatched,pedigree-method |
Man page
|
| getExternalMatched,pedigreeList-method |
Man page
|
| getFounders |
Man page
|
| getFounders,FAData-method |
Man page
|
| getFounders,data.frame-method |
Man page
|
| getGenerationMatched |
Man page
|
| getGenerationMatched,FAData-method |
Man page
|
| getGenerationMatched,data.frame-method |
Man page
|
| getGenerationMatched,pedigree-method |
Man page
|
| getGenerationMatched,pedigreeList-method |
Man page
|
| getGenerationSexMatched |
Man page
|
| getGenerationSexMatched,FAData-method |
Man page
|
| getGenerationSexMatched,data.frame-method |
Man page
|
| getGenerationSexMatched,pedigree-method |
Man page
|
| getGenerationSexMatched,pedigreeList-method |
Man page
|
| getMissingMate |
Man page
|
| getMissingMate,FAData-method |
Man page
|
| getMissingMate,data.frame-method |
Man page
|
| getMissingMate,pedigree-method |
Man page
|
| getMissingMate,pedigreeList-method |
Man page
|
| getParents |
Source code
|
| getSexMatched |
Man page
|
| getSexMatched,FAData-method |
Man page
|
| getSexMatched,data.frame-method |
Man page
|
| getSexMatched,pedigree-method |
Man page
|
| getSexMatched,pedigreeList-method |
Man page
|
| getSiblings |
Man page
|
| getSiblings,FAData-method |
Man page
|
| getSiblings,data.frame-method |
Man page
|
| getSiblings,pedigree-method |
Man page
|
| getSiblings,pedigreeList-method |
Man page
|
| getSingletons |
Man page
|
| getSingletons,FAData-method |
Man page
|
| getSingletons,data.frame-method |
Man page
|
| haplopaint |
Source code
|
| inc.density |
Source code
|
| inc.hist |
Source code
|
| inc.table |
Source code
|
| independentGroupCount |
Man page
|
| independentGroupCount,FAKinGroupResults-method |
Man page
|
| infOrZero |
Source code
|
| kinship |
Man page
|
| kinship,FAData-method |
Man page
|
| kinshipGroupTest |
Man page
|
| kinshipGroupTest,FAData-method |
Man page
|
| kinshipPairs |
Man page
Source code
|
| kinshipSumTest |
Man page
|
| kinshipSumTest,FAData-method |
Man page
|
| ks2paint |
Source code
|
| lambda |
Man page
|
| lambda,FAStdIncidenceRateResults-method |
Man page
|
| noColNames |
Source code
|
| ped2df |
Source code
|
| ped2graph |
Man page
Source code
|
| pedigree |
Man page
|
| pedigree,FAData-method |
Man page
|
| pedigree,missing-method |
Man page
|
| pedigree<- |
Man page
|
| pedigree<-,FAData-method |
Man page
|
| pedigreeSize |
Man page
|
| pedigreeSize,FAData-method |
Man page
|
| phenotypedIndividuals |
Man page
|
| phenotypedIndividuals,FAData-method |
Man page
|
| plotPed |
Man page
|
| plotPed,FAData-method |
Man page
|
| plotPed,FAGenIndexResults-method |
Man page
|
| plotPed,FAIncidenceRateResults-method |
Man page
|
| plotPed,FAKinGroupResults-method |
Man page
|
| plotPed,FAKinSumResults-method |
Man page
|
| plotPed,FAProbResults-method |
Man page
|
| plotPed,FAStdIncidenceRateResults-method |
Man page
|
| plotPedForKinshipResult |
Source code
|
| plotRes |
Man page
|
| plotRes,FAGenIndexResults-method |
Man page
|
| plotRes,FAIncidenceRateResults-method |
Man page
|
| plotRes,FAKinGroupResults-method |
Man page
|
| plotRes,FAKinSumResults-method |
Man page
|
| plotRes,FAStdIncidenceRateResults-method |
Man page
|
| probabilityTest |
Man page
|
| probabilityTest,FAData-method |
Man page
|
| removeSingletons |
Man page
|
| removeSingletons,FAData-method |
Man page
|
| removeSingletons,data.frame-method |
Man page
|
| result |
Man page
|
| result,FABinTestResults-method |
Man page
|
| result,FAGenIndexResults-method |
Man page
|
| result,FAIncidenceRateResults-method |
Man page
|
| result,FAKinGroupResults-method |
Man page
|
| result,FAKinSumResults-method |
Man page
|
| result,FAProbResults-method |
Man page
|
| result,FAStdIncidenceRateResults-method |
Man page
|
| resultForId |
Man page
|
| resultForId,FAStdIncidenceRateResults-method |
Man page
|
| runSimulation |
Man page
|
| runSimulation,FAGenIndexResults-method |
Man page
|
| runSimulation,FAIncidenceRateResults-method |
Man page
|
| runSimulation,FAKinGroupResults-method |
Man page
|
| runSimulation,FAKinSumResults-method |
Man page
|
| runSimulation,FAProbResults-method |
Man page
|
| runSimulation,FAStdIncidenceRateResults-method |
Man page
|
| sanitizePed |
Source code
|
| sanitizeSex |
Source code
|
| shareKinship |
Man page
|
| shareKinship,FAData-method |
Man page
|
| shareKinship,FAKinGroupResults-method |
Man page
|
| shareKinship,FAProbResults-method |
Man page
|
| show |
Man page
|
| show,FAData-method |
Man page
|
| significant.individuals.althyp |
Source code
|
| sliceAge |
Man page
Source code
|
| subPedigree |
Man page
Source code
|
| switchPlotfun |
Man page
Source code
|
| table2hist.int |
Source code
|
| timeAtRisk |
Man page
|
| timeAtRisk,FAIncidenceRateResults-method |
Man page
|
| timeAtRisk<- |
Man page
|
| timeAtRisk<-,FAIncidenceRateResults-method |
Man page
|
| timeInStrata |
Man page
|
| timeInStrata,FAStdIncidenceRateResults-method |
Man page
|
| trait |
Man page
|
| trait,FAData-method |
Man page
|
| trait<- |
Man page
|
| trait<-,FABinTestResults-method |
Man page
|
| trait<-,FAData-method |
Man page
|
| trait<-,FAGenIndexResults-method |
Man page
|
| trait<-,FAIncidenceRateResults-method |
Man page
|
| trait<-,FAKinGroupResults-method |
Man page
|
| trait<-,FAKinSumResults-method |
Man page
|
| trait<-,FAProbResults-method |
Man page
|
| trait<-,FAStdIncidenceRateResults-method |
Man page
|
| traitByClique |
Man page
|
| traitByClique,FAProbResults-method |
Man page
|
| validateFAData |
Source code
|
| writePed |
Source code
|
