extractGenes: Extract Genes
In Evatar/genescraper: Scrape NCBI databases

Description Usage Arguments Value Examples

Extracts the gene ids from the information scraped from the PubTator website.

1	extractGenes(IDs, nCores = 2, nTries = 5)

`IDs`	A list of article ids from the NCBI website.
`nCores`	An integer for the number of cores to use to mine the NCBI articles.
`nTries`	An integer for the number of times to attempt to connect to the NCBI website.

A list. Each element in the list is also a list. It contains the entrez gene ids for all the genes found in each abstract.

pmids <- scrapeIDs(dataBase = 'pubmed',
                   term = '(vivax malaria[MeSH Terms]) AND (folic acid antagonists[MeSH Terms])')

geneNames <- extractGenes(IDs = pmids,
                          nCores = 2,
                          nTries = 5)