API for EvoNetHIV/EvoNetVaccine
Evonet: Integrated Bio-Social Models for HIV Epidemiology

Global functions
coital_acts_table_fxn Source code
incidence_rate_plot Source code
infection_history_plot Source code
infection_history_vl_cd4_plot Source code
infection_summary_table_fxn Source code
initialize_agents Source code
initialize_evonet_misc Source code
initialize_infecteds_cd4 Source code
initialize_infecteds_vl Source code
initialize_module Source code
initialize_popsumm_dynamics Source code
initialize_restart Source code
initialize_vl_cd4_list Source code
input_parameters_age_distribution Source code
input_parameters_agent_attributes Source code
input_parameters_asmr Source code Source code
input_parameters_cd4_data Source code
input_parameters_derived Source code
input_parameters_popsumm_stats Source code
input_parameters_primary Source code
input_parameters_qaqc Source code
new_additions_fxn Source code
new_additions_fxn_both Source code
output_plots_fxn Source code
plot_age_hist Source code
plot_disc_coital_acts_history Source code
plot_end_epidemic_values Source code Source code
plot_fxn2 Source code
plot_heritability_quarters Source code
plot_network_fxn Source code
plot_relationship_duration Source code
plot_relationship_history Source code
plot_summary_timeseries Source code
plot_table_parameters Source code
plot_time_to_removal Source code
plot_time_to_removal_by_spvl Source code
plot_vl_trajectories Source code
plot_vl_trajectories_aim2 Source code
plot_vl_trajectories_aim3 Source code
plots_initial_diagnostic Source code
plots_popsumm Source code
plots_popsumm_all_NA_flag Source code
plots_popsumm_all_NA_plot Source code
plots_popsumm_internal Source code
plots_popsumm_mean_value Source code
plots_popsumm_mean_value_loess Source code
plots_popsumm_multi_models Source code
plots_popsumm_overlay_lines Source code
plots_popsumm_plotting Source code
plots_popsumm_ymin_ymax Source code
setup_epimodel_control_object Source code
setup_initialize_network Source code
social_2nd_line_treatment_module Source code
social_adherence Source code
social_attribute_transition_module Source code
social_coital_acts Source code
social_coital_acts_module Source code
social_condom_use Source code
social_discord_edgelist Source code
social_discord_edgelist_df Source code
social_generic_attribute_transition Source code
social_resistance_testing_module Source code
social_role_msm Source code
social_set_generic_attribute_on_nw Source code
social_set_msm_role_on_nw Source code
social_testing_diagnosis_module Source code
social_treatment_module Source code
social_treatment_module_john Source code
social_treatment_ranked Source code
social_treatment_vaccination Source code
summary_end_epidemic_values Source code
summary_evo_newick Source code
summary_misc Source code
summary_module Source code
summary_popsumm Source code
summary_popsumm_fxns Source code
summary_popsumm_generic_att_fxns Source code
summary_spvl_lineage Source code
summary_viral_lineage Source code
summary_vl_list Source code
transmission_bookkeeping_module Source code
transmission_cd4_module Source code
transmission_hill_fxn Source code
transmission_hughes_and_exp Source code
transmission_main_module Source code
utilities_annual_mortality_conversion Source code
utilities_annual_prob_conversion Source code
utilities_apportion.lr Source code
viral_initialCD4 Source code
viral_lineage_fnx2 Source code
viral_spvl_cat_fxn Source code
viral_update_aim3 Source code
viral_update_aim3_args_list_1 Source code
viral_update_aim3_args_list_2 Source code
viral_update_aim3_cd4 Source code
viral_update_aim3_rcpp_output Source code
viral_update_cd4_daily Source code
viral_update_cd4_diff_eqn Source code
viral_update_cd4_intial_pop Source code
viral_update_cd4_simple_diff_eqn Source code
viral_update_gamma Source code
vital_aging_module Source code
vital_births_bookkeeping_misc Source code
vital_births_bookkeeping_pop Source code
vital_births_calculate_new Source code
vital_births_module Source code
vital_death_aged_out Source code
vital_death_aids Source code
vital_death_non_aids Source code
vital_deaths_module Source code
vital_initial_age_dist Source code
EvoNetHIV/EvoNetVaccine documentation built on June 2, 2017, 10:27 a.m.