| coital_acts_table_fxn |
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| incidence_rate_plot |
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| infection_history_plot |
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| infection_history_vl_cd4_plot |
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| infection_summary_table_fxn |
Man page
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| initialize_agents |
Man page
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| initialize_evonet_misc |
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| initialize_infecteds_cd4 |
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| initialize_infecteds_vl |
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| initialize_module |
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| initialize_popsumm_dynamics |
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| initialize_restart |
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| initialize_vl_cd4_list |
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| input_parameters_age_distribution |
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| input_parameters_agent_attributes |
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| input_parameters_asmr |
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| input_parameters_cd4_data |
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| input_parameters_derived |
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| input_parameters_popsumm_stats |
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| input_parameters_primary |
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| input_parameters_qaqc |
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| new_additions_fxn |
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| new_additions_fxn_both |
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| output_plots_fxn |
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| plot_age_hist |
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| plot_disc_coital_acts_history |
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| plot_end_epidemic_values |
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| plot_heritability_quarters |
Man page
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| plot_network_fxn |
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| plot_relationship_duration |
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| plot_relationship_history |
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| plot_summary_timeseries |
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| plot_table_parameters |
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| plot_time_to_removal |
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| plot_time_to_removal_by_spvl |
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| plot_vl_trajectories |
Man page
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| plot_vl_trajectories_aim2 |
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| plot_vl_trajectories_aim3 |
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| plots_initial_diagnostic |
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| plots_popsumm_multi_models |
Man page
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| plots_popsumm_ymin_ymax |
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| setup_epimodel_control_object |
Man page
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| setup_initialize_network |
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| social_2nd_line_treatment_module |
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| social_adherence |
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| social_attribute_transition_module |
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| social_coital_acts |
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| social_coital_acts_module |
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| social_condom_use |
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| social_discord_edgelist |
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| social_discord_edgelist_df |
Man page
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| social_generic_attribute_transition |
Man page
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| social_resistance_testing_module |
Man page
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| social_role_msm |
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| social_set_generic_attribute_on_nw |
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| social_set_msm_role_on_nw |
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| social_testing_diagnosis_module |
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| social_treatment_module |
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| social_treatment_module_john |
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| social_treatment_ranked |
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| social_treatment_vaccination |
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| social_viral_load_testing_module |
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| summary_end_epidemic_values |
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| summary_evo_newick |
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| summary_misc |
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| summary_module |
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| summary_popsumm |
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| summary_popsumm_fxns |
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| summary_viral_lineage |
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| summary_vl_list |
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| transmission_bookkeeping_module |
Man page
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| transmission_cd4_module |
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| transmission_hill_fxn |
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| transmission_hughes_and_exp |
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| transmission_main_module |
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| utilities_apportion.lr |
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| viral_spvl_cat_fxn |
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| viral_update_aim3 |
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| viral_update_aim3_args_list_1 |
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| viral_update_aim3_args_list_2 |
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| viral_update_aim3_cd4 |
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| viral_update_aim3_rcpp_output |
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| viral_update_cd4_daily |
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| viral_update_cd4_diff_eqn |
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| viral_update_cd4_intial_pop |
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| viral_update_cd4_simple_diff_eqn |
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| viral_update_gamma |
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| vital_aging_module |
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| vital_births_bookkeeping_misc |
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| vital_births_bookkeeping_pop |
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| vital_births_calculate_new |
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| vital_births_module |
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| vital_death_aged_out |
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| vital_death_aids |
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| vital_death_non_aids |
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| vital_deaths_module |
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| vital_initial_age_dist |
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