API for EvoNetHIV/RoleSPVL
Evonet: Integrated Bio-Social Models for HIV Epidemiology

Global functions
coital_acts_table_fxn Man page Source code
incidence_rate_plot Man page Source code
infection_history_plot Man page Source code
infection_history_vl_cd4_plot Man page Source code
infection_summary_table_fxn Man page Source code
initialize_agents Man page Source code
initialize_evonet_misc Man page Source code
initialize_infecteds_cd4 Man page Source code
initialize_infecteds_vl Man page Source code
initialize_module Man page Source code
initialize_popsumm_dynamics Man page Source code
initialize_restart Man page Source code
initialize_vl_cd4_list Man page Source code
input_parameters_age_distribution Man page Source code
input_parameters_agent_attributes Man page Source code
input_parameters_asmr Man page Man page Source code Source code
input_parameters_cd4_data Man page Source code
input_parameters_derived Man page Source code
input_parameters_popsumm_stats Man page Source code
input_parameters_primary Man page Source code
input_parameters_qaqc Man page Source code
new_additions_fxn Man page Source code
new_additions_fxn_both Man page Source code
output_plots_fxn Man page Source code
plot_age_hist Man page Source code
plot_disc_coital_acts_history Man page Source code
plot_end_epidemic_values Man page Source code Source code
plot_fxn2 Source code
plot_heritability_quarters Man page Source code
plot_network_fxn Man page Source code
plot_relationship_duration Man page Source code
plot_relationship_history Man page Source code
plot_summary_timeseries Man page Source code
plot_table_parameters Man page Source code
plot_time_to_removal Man page Source code
plot_time_to_removal_by_spvl Man page Source code
plot_vl_trajectories Man page Source code
plot_vl_trajectories_aim2 Man page Source code
plot_vl_trajectories_aim3 Man page Source code
plots_initial_diagnostic Man page Source code
plots_popsumm Source code
plots_popsumm_all_NA_flag Source code
plots_popsumm_all_NA_plot Source code
plots_popsumm_internal Source code
plots_popsumm_mean_value Source code
plots_popsumm_mean_value_loess Source code
plots_popsumm_multi_models Man page Source code
plots_popsumm_overlay_lines Source code
plots_popsumm_plotting Source code
plots_popsumm_ymin_ymax Man page Source code
setup_epimodel_control_object Man page Source code
setup_initialize_network Man page Source code
social_2nd_line_treatment_module Man page Source code
social_adherence Man page Source code
social_attribute_transition_module Man page Source code
social_coital_acts Man page Source code
social_coital_acts_module Man page Source code
social_condom_use Man page Source code
social_discord_edgelist Man page Source code
social_discord_edgelist_df Man page Source code
social_generic_attribute_transition Man page Source code
social_resistance_testing_module Man page Source code
social_role_msm Man page Source code
social_set_generic_attribute_on_nw Man page Source code
social_set_msm_role_on_nw Man page Source code
social_testing_diagnosis_module Man page Source code
social_treatment_module Man page Source code
social_treatment_module_john Man page Source code
social_treatment_ranked Man page Source code
social_treatment_vaccination Man page Source code
social_viral_load_testing_module Man page Source code
summary_end_epidemic_values Man page Source code
summary_evo_newick Man page Source code
summary_misc Man page Source code
summary_module Man page Source code
summary_popsumm Man page Source code
summary_popsumm_fxns Man page Source code
summary_popsumm_generic_att_fxns Source code
summary_spvl_lineage Source code
summary_viral_lineage Man page Source code
summary_vl_list Man page Source code
transmission_bookkeeping_module Man page Source code
transmission_cd4_module Man page Source code
transmission_hill_fxn Man page Source code
transmission_hughes_and_exp Man page Source code
transmission_main_module Man page Source code
utilities_annual_mortality_conversion Source code
utilities_annual_prob_conversion Source code
utilities_apportion.lr Man page Source code
viral_initialCD4 Source code
viral_lineage_fnx2 Source code
viral_spvl_cat_fxn Man page Source code
viral_update_aim3 Man page Source code
viral_update_aim3_args_list_1 Man page Source code
viral_update_aim3_args_list_2 Man page Source code
viral_update_aim3_cd4 Man page Source code
viral_update_aim3_rcpp_output Man page Source code
viral_update_cd4_daily Man page Source code
viral_update_cd4_diff_eqn Man page Source code
viral_update_cd4_intial_pop Man page Source code
viral_update_cd4_simple_diff_eqn Man page Source code
viral_update_gamma Man page Source code
vital_aging_module Man page Source code
vital_births_bookkeeping_misc Man page Source code
vital_births_bookkeeping_pop Man page Source code
vital_births_calculate_new Man page Source code
vital_births_module Man page Source code
vital_death_aged_out Man page Source code
vital_death_aids Man page Source code
vital_death_non_aids Man page Source code
vital_deaths_module Man page Source code
vital_initial_age_dist Man page Source code
EvoNetHIV/RoleSPVL documentation built on Sept. 16, 2017, 12:11 a.m.