| InitErgmTerm.absdiffby |
Source code
|
| adherence |
Source code
|
| aging |
Source code
|
| assign_ai_prop |
Source code
|
| births |
Source code
|
| cd4_update |
Source code
|
| cd4_update2 |
Source code
|
| coital_acts |
Source code
|
| coital_acts_table_fxn |
Source code
|
| deaths |
Source code
|
| deaths_tx_time_adjusted |
Source code
|
| evonet |
Source code
|
| evonet_run |
Source code
|
| evonet_setup |
Source code
|
| evoplot |
Source code
|
| evoplot_internal |
Source code
|
| evorun |
Source code
|
| incidence_rate_plot |
Source code
|
| infection_history_plot |
Source code
|
| infection_history_vl_cd4_plot |
Source code
|
| infection_summary_table_fxn |
Source code
|
| initialize_agents |
Source code
|
| initialize_evonet_misc |
Source code
|
| initialize_infecteds_cd4 |
Source code
|
| initialize_infecteds_vl |
Source code
|
| initialize_module |
Source code
|
| initialize_popsumm_dynamics |
Source code
|
| initialize_restart |
Source code
|
| initialize_vl_cd4_list |
Source code
|
| input_parameters_age_distribution |
Source code
|
| input_parameters_agent_attributes |
Source code
|
| input_parameters_asmr |
Source code
|
| input_parameters_cd4_data |
Source code
Source code
|
| input_parameters_derived |
Source code
|
| input_parameters_popsumm_stats |
Source code
|
| input_parameters_primary |
Source code
|
| input_parameters_primary_DEPRECATED |
Source code
|
| input_parameters_process |
Source code
|
| input_parameters_qaqc |
Source code
|
| input_params |
Source code
|
| model_fit |
Source code
|
| new_additions_fxn |
Source code
|
| nw_setup |
Source code
|
| output_plots_fxn |
Source code
|
| plot_age_hist |
Source code
|
| plot_aim3_drug_muts |
Source code
|
| plot_disc_coital_acts_history |
Source code
|
| plot_donors_cd4 |
Source code
|
| plot_end_epidemic_values |
Source code
Source code
|
| plot_heritability_quarters |
Source code
|
| plot_network_fxn |
Source code
|
| plot_relationship_duration |
Source code
|
| plot_relationship_history |
Source code
|
| plot_summary_timeseries |
Source code
|
| plot_table_parameters |
Source code
|
| plot_time_to_removal |
Source code
|
| plot_time_to_removal_by_spvl |
Source code
|
| plot_vl_trajectories |
Source code
|
| plot_vl_trajectories_aim2 |
Source code
|
| plot_vl_trajectories_aim3 |
Source code
|
| plots_popsumm |
Source code
|
| plots_popsumm_all_NA_flag |
Source code
Source code
|
| plots_popsumm_all_NA_plot |
Source code
Source code
|
| plots_popsumm_deprecated |
Source code
Source code
|
| plots_popsumm_internal |
Source code
Source code
|
| plots_popsumm_mean_value |
Source code
Source code
|
| plots_popsumm_mean_value_loess |
Source code
Source code
|
| plots_popsumm_multi_models |
Source code
|
| plots_popsumm_overlay_lines |
Source code
Source code
|
| plots_popsumm_plotting |
Source code
Source code
|
| plots_popsumm_ymin_ymax |
Source code
Source code
|
| remove_offset_relationships |
Source code
|
| restart_module |
Source code
|
| risk_group_changes |
Source code
|
| risk_heterogeneity_module |
Source code
|
| setup_epimodel_control_object |
Source code
|
| setup_initialize_network |
Source code
|
| social_2nd_line_treatment_module |
Source code
|
| social_act_type_het |
Source code
|
| social_adherence |
Source code
|
| social_attribute_transition_module |
Source code
|
| social_bring_new_groups_into_care_module |
Source code
|
| social_coital_acts |
Source code
|
| social_coital_acts_module |
Source code
|
| social_condom_use |
Source code
|
| social_discord_edgelist_df |
Source code
|
| social_dropout_module |
Source code
|
| social_generic_attribute_transition |
Source code
|
| social_increased_testing_defined_groups |
Source code
|
| social_increased_testing_selected_groups_module |
Source code
Source code
|
| social_resistance_testing_module |
Source code
|
| social_role_msm |
Source code
|
| social_set_generic_attribute_on_nw |
Source code
|
| social_set_msm_role_on_nw |
Source code
|
| social_testing_diagnosis_eligibles_only_module |
Source code
|
| social_testing_diagnosis_module |
Source code
|
| social_testing_diagnosis_with_enhancements_module |
Source code
|
| social_treatement_prep |
Source code
|
| social_treatement_prep_SES |
Source code
|
| social_treatment_dropout |
Source code
|
| social_treatment_dropout_john |
Source code
|
| social_treatment_module |
Source code
|
| social_treatment_module_PrEP |
Source code
|
| social_treatment_module_john |
Source code
|
| social_treatment_module_john_v3 |
Source code
|
| social_treatment_module_multiple_criteria |
Source code
|
| social_treatment_module_multiple_criteria_v2 |
Source code
|
| social_treatment_ranked |
Source code
|
| social_treatment_sex_age |
Source code
|
| social_treatment_vaccination |
Source code
|
| social_viral_load_testing_module |
Source code
|
| summary_end_epidemic_values |
Source code
|
| summary_evo_newick |
Source code
|
| summary_misc |
Source code
|
| summary_module |
Source code
|
| summary_partner_list |
Source code
|
| summary_popsumm |
Source code
|
| summary_popsumm_deprec |
Source code
|
| summary_popsumm_fxns |
Source code
|
| summary_popsumm_generic_att_fxns |
Source code
|
| summary_popsumm_mat |
Source code
|
| summary_popsumm_vars |
Source code
|
| summary_spvl_lineage |
Source code
|
| summary_viral_lineage |
Source code
|
| summary_vl_list |
Source code
|
| targeted_treatment |
Source code
|
| targeted_treatment2 |
Source code
|
| targeted_treatment6 |
Source code
|
| testing |
Source code
|
| transmission |
Source code
|
| transmission_bookkeeping_module |
Source code
|
| transmission_cd4_module |
Source code
|
| transmission_hill_fxn |
Source code
|
| transmission_hughes_and_exp |
Source code
|
| transmission_main_module |
Source code
|
| treatment |
Source code
|
| treatment_dropout |
Source code
|
| update_compact_el_and_rel_durs |
Source code
|
| utilities_annual_mortality_conversion |
Source code
|
| utilities_annual_prob_conversion |
Source code
|
| utilities_apportion.lr |
Source code
|
| vaccination |
Source code
|
| viral_dynamics_aim3 |
Source code
|
| viral_initialCD4 |
Source code
|
| viral_lineage_fnx2 |
Source code
|
| viral_spvl_cat_fxn |
Source code
|
| viral_update |
Source code
|
| viral_update_aim3 |
Source code
|
| viral_update_aim3_args_list_1 |
Source code
|
| viral_update_aim3_args_list_2 |
Source code
|
| viral_update_aim3_cd4 |
Source code
|
| viral_update_aim3_rcpp_output |
Source code
|
| viral_update_cd4_daily |
Source code
|
| viral_update_cd4_daily_aids_var |
Source code
|
| viral_update_cd4_daily_with_age |
Source code
|
| viral_update_cd4_diff_eqn |
Source code
|
| viral_update_cd4_intial_pop |
Source code
|
| viral_update_cd4_simple_diff_eqn |
Source code
|
| viral_update_delayed_rebound |
Source code
|
| viral_update_gamma |
Source code
|
| viral_update_gamma_dropout |
Source code
|
| viral_update_gamma_john |
Source code
|
| viral_update_gamma_treated |
Source code
|
| vital_aging_module |
Source code
|
| vital_births_bookkeeping_misc |
Source code
|
| vital_births_bookkeeping_pop |
Source code
|
| vital_births_calculate_new |
Source code
|
| vital_births_module |
Source code
Source code
|
| vital_death_aged_out |
Source code
|
| vital_death_aids |
Source code
|
| vital_death_aids_john |
Source code
|
| vital_death_non_aids |
Source code
|
| vital_deaths_module |
Source code
|
| vital_deaths_module_john |
Source code
|
| vital_initial_age_dist |
Source code
|
