ExoLab-UPLCMS/MetaboliteHub: Connects databases and retrieves information.

Starting from metabolite codes from both KEGG and HMDB databases, the functions look for related enzymes, genes and metabolic pathways. Then, another set of functions use the genes obtained to search in different databases (PubMed, OMIM, GEO and Entrez Nucleotide) to obtain information already published of the metabolites of interest in all these 4 databases.

Getting started

Package details

AuthorMarc Clos, Juan Manuel Falcon
MaintainerMC <mcg.marc@gmail.com>, JMF <jfalcon@cicbiogune.es>
LicensePrivate
Version0.1.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ExoLab-UPLCMS/MetaboliteHub")
ExoLab-UPLCMS/MetaboliteHub documentation built on April 1, 2020, 12:01 a.m.