hsumm: Retrieve all available information of interest from HMDB...
In ExoLab-UPLCMS/MetaboliteHub: Connects databases and retrieves information.
Description
Usage
Arguments
Value
Description
Starting from HMDB ID, it retrieves the Accession number of the metabolite, the name and chemical and SMILE formula,
the diseases/pathways described in which it is involved, the KEGG ID to connect with KEGG database and the genes that are
related to it.
Usage
1
hsumm(x)
Arguments
x
is the metabolite codified in HMDB ID
Value
returns a data.frame of different data entries: Acces for accession nubmer, Name for the metabolite name, Formula for its formula, SMILES for
the formula in SMILES form, Genes for the list of genes related to the metabolite and Paths for the metabolic pathways related to the metabolite.
ExoLab-UPLCMS/MetaboliteHub documentation built on April 1, 2020, 12:01 a.m.
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Description Usage Arguments Value
Description
Starting from HMDB ID, it retrieves the Accession number of the metabolite, the name and chemical and SMILE formula, the diseases/pathways described in which it is involved, the KEGG ID to connect with KEGG database and the genes that are related to it.
Usage
1 | hsumm(x)
|
Arguments
x |
is the metabolite codified in HMDB ID |
Value
returns a data.frame of different data entries: Acces for accession nubmer, Name for the metabolite name, Formula for its formula, SMILES for the formula in SMILES form, Genes for the list of genes related to the metabolite and Paths for the metabolic pathways related to the metabolite.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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