Man pages for FASTGenomics/jupyter-fgread-r
FASTGenomics read module for R
| add_metadata | Adds some data from the metadata directly to the meta.data of... |
| ds_info | Get information on all available datasets in this analysis. |
| expr_file_infos_to_list | Returns DataFileInfos as a vecotor or as a string. |
| get_datasets_df | Construct a dataframe of all availabe datasets |
| get_ds_paths | Get paths of all available datasets |
| load_data | Loads a single dataset to a Seurat object. |
| matrix_to_seurat | a helper function that constructs a seurat object from an... |
| read_10xhdf5_to_seurat | Read 10x hdf5 dataset into seurat. |
| read_10xmtx_to_seurat | Read 10x mtx (mex) dataset to seurat. |
| read_anndata_to_seurat | Read AnnData to Seurat with Seurat's function 'ReadH5AD'.... |
| read_anndata_to_seurat_exp | Read AnnData to Seurat with experimental FASTGenomics reader.... |
| read_densecsv_to_seurat | Read dense matrix in csv form |
| read_densemat_to_seurat | Read dense matrix here we need to unpack the dataset before... |
| read_densetsv_to_seurat | Read dense matrix in tsv form |
| read_loom_to_seurat | Reading a loom dataset in Seurat v3 uses loomR and may not... |
| read_loom_to_seurat_exp | Read a loom dataset with the experimental FASTGenomics... |
| read_seurat_to_seurat | Read a Seurat object. |
| select_ds_id | Select a single dataset from a pandas DataFrame by its ID or... |
