read_loom_to_seurat_exp: Read a loom dataset with the experimental FASTGenomics...
In FASTGenomics/jupyter-fgread-r: FASTGenomics read module for R
Description
Usage
Arguments
Value
Description
Read a loom dataset with the experimental FASTGenomics reader.
Importing Loom is not always working as expected in Seurat v3.
This beta loader provided by FASTGenomics only reads the count table
and the row/col attributes that can fit in a data frame structure (i.e. all higher
dimensional attributes are discarded). To keep the implementation simple we read the
whole object into memory, including the dense count matrix. This could be a
potential bottleneck for larger datasets.
Usage
1
read_loom_to_seurat_exp(ds_file)
Arguments
ds_file
The path to the dataset file.
Value
A seurat Object.
FASTGenomics/jupyter-fgread-r documentation built on March 10, 2021, 9:26 p.m.
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Description Usage Arguments Value
Description
Read a loom dataset with the experimental FASTGenomics reader. Importing Loom is not always working as expected in Seurat v3. This beta loader provided by FASTGenomics only reads the count table and the row/col attributes that can fit in a data frame structure (i.e. all higher dimensional attributes are discarded). To keep the implementation simple we read the whole object into memory, including the dense count matrix. This could be a potential bottleneck for larger datasets.
Usage
1 | read_loom_to_seurat_exp(ds_file)
|
Arguments
ds_file |
The path to the dataset file. |
Value
A seurat Object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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