Man pages for FASTGenomics/r_client
Manage FASTGenomics Instances
| accept_offer | Accept an offer |
| connect | Get a FastGenomics connection object to a specific... |
| connect_with_bearer_token | Get a FastGenomics connection object to a specific... |
| connect_with_pat_insecure | Get a FastGenomics connection object to a specific... |
| create_analysis_template | A helper function that creates a template for the analysis.... |
| create_app | Creates a new app |
| create_dataset | Creates a new dataset on fastgenomics |
| create_dataset_df | Submits a data set from a sparse matrix of dgTmatrix type and... |
| create_dataset_from_seurat | Uploads a seurat dataset. |
| create_share | Create a new share |
| create_workflow | Creates a new workflow on the server. |
| decline_offer | Decline an offer |
| delete_app | Delete an app. This will fail if the app is used in any... |
| delete_dataset | Deletes a single data set. |
| delete_share | Delete a share |
| delete_workflow | Delete a specific workflow. |
| download_dataset | Downloads the whole dataset content as a zip file to the... |
| FGConnection | A FGConnection |
| FGDatasetUploadParameters | Get the optional parameters to create a dataset |
| FGErrorModelResponse-class | Validation error |
| FGErrorResponse-class | Unexpected server error |
| FGResponse-class | A FG response after a successful request |
| FGValidationProblemResponse-class | Encapsulates RFC 7807 Problem details, with the errors field... |
| get_app | Get an app |
| get_apps | Get all apps |
| get_dataset | Get a specific dataset |
| get_datasets | Get all datasets |
| get_edit_model_of_workflow | Get a specific workflow as an editable model |
| get_known_defaults | Get a list of all known defaults |
| get_offer | Get an offer |
| get_offers | Get up to 100 offers from the client |
| get_share | Get a share |
| get_shares | Get all shares |
| get_valid_gene_nomenclatures | Get a list of all supported gene nomenclatures |
| get_valid_matrix_formats | Get a list of all supported matrix formats |
| get_valid_technologies | Get a list of all supported technologies |
| get_workflow | Get a specific workflow |
| get_workflows | Get all workflows |
| modify_dataset | Modify the data set metadata |
| modify_workflow | Modifies an existing workflow |
| parse_response | Parses a raw httr response into an FGResponse representing an... |
| poll_analysis_until_completed | Waits for analysis to complete. |
| poll_app_until_validated | Waits for the validation of the app to complete. |
| poll_dataset_until_validated | Waits for the validation of the dataset to complete. |
| revoke_share | Revoke a share for a recipient |
| run_analysis | This function orders an analysis to run on FASTGenomics.... |
| save_workflow_as_file | Saves the JSON of a workflow as a file |
