marchenko_pastur_fit: Graph reconstruction algorithm.

Description Usage Arguments

View source: R/marchenko_pastur.R

Description

Graph reconstruction algorithm.

Usage

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marchenko_pastur_fit(
  TS,
  remove_largest = F,
  metric_distance = F,
  tol = 1e-15,
  threshold_type = "range",
  ...
)

Arguments

TS

N * L matrix consisting of L observations from N variables.

remove_largest

If False, all the eigenvectors associated to the significant eigenvalues will be used to reconstruct the de-noised empirical correlation matrix. If True, the eigenvector associated to the largest eigenvalue is going to be excluded from the recontruction step.

metric_distance

If False, a signed graph is obtained. If True, the correlation is transformed by defining a metric distance between each pair of nodes

tol

avoid minor difference between python and r in case of calculating eigen values

threshold_type

Which thresholding function to use on the matrix of weights.

...

Arguments


Fagan-Lab/constructnet documentation built on Feb. 19, 2021, 12:12 a.m.