methodSignatures: Raw Method Signatures and Filter Data

In Famingzhao/ConsensusTME: A Consensus Approach To Tumour Microenvironment Cell Estimation

Description

Compilation of gene sets, signature matracies and filters for generation of ConsensusTME gene sets

Usage

data(methodSignatures)

Format

list:

Bindea

Gene sets for 24 immune cells & 2 biological processes

Danaher

Gene sets for 14 immune cells

Davoli

Gene sets for 10 immune cells

MCP.Counter

Gene sets for 10 immune cells & 2 stromal cells

xCell

Gene sets for 34 immune cells, 9 other cells of haematopoietic lineage & 21 cells of non haematopoietic lineage

CIBERSORT

LM22 signature matrix for 22 immune cell types

ImmuneGenes

Dataframe with immune genes with negative correlation with tumour purity for each cancer type

ESTIMATE

Dataframe with ESTIMATES stromal genes that have a negative correlation with tumour purity for each cancer type

Famingzhao/ConsensusTME documentation built on Dec. 17, 2021, 8:23 p.m.