FLCNA_normalization: FLCNA normalization

In FeiQin92/FLCNV: Simultaneous CNV Detection And Subclone Clustering With Single Cell Sequencing Data

FLCNA normalization

Description

Normalization function used in FLCNA.

Normalization function used in FLCNA.

Usage

FLCNA_normalization(Y, bin_size = 1e+05, gc, map, ref_id)

FLCNA_normalization(Y, bin_size = 1e+05, gc, map, ref_id)

Arguments

Y	A p-dimensional data matrix. Each row is an observation.
bin_size	The bin size used in the data the default is 100,000.
gc	A p-dimensional vector with gc concent.
map	A p-dimensional vector with mappability.
ref_id	cells used as reference.

Value

The log2Rdata used for main step for the FLCNA method.

The log2Rdata used for main step for the FLCNA method.

FeiQin92/FLCNV documentation built on June 13, 2025, 3:30 a.m.