Files in FelixErnst/RNAmodR
Detection of post-transcriptional modifications in high throughput sequencing data
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc-devel.yml
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllGenerics.R
R/Gviz-ModifiedSequenceTrack-class.R
R/Modifier-Inosine-class.R
R/Modifier-Inosine-viz.R
R/Modifier-class.R
R/Modifier-roc.R
R/Modifier-subset.R
R/Modifier-utils.R
R/Modifier-viz.R
R/ModifierSet-class.R
R/ModifierSet-comparison.R
R/ModifierSet-viz.R
R/RNAmodR-external-functions.R
R/RNAmodR-summary.R
R/RNAmodR.R
R/SequenceData-class.R
R/SequenceData-coverage.R
R/SequenceData-end-pos.R
R/SequenceData-normalized-end-pos.R
R/SequenceData-pileup.R
R/SequenceData-protected-end-pos.R
R/SequenceData-stats.R
R/SequenceData-subset.R
R/SequenceData-viz.R
R/SequenceDataFrame-class.R
R/SequenceDataList-class.R
R/SequenceDataList-viz.R
R/SequenceDataSet-class.R
R/SequenceDataSet-viz.R
R/normalization.R
R/settings.R
R/utils-bam.R
R/utils.R
README.md
data/csd.rda
data/e3sd.rda
data/e5sd.rda
data/esd.rda
data/msi.rda
data/ne3sd.rda
data/ne5sd.rda
data/pesd.rda
data/psd.rda
data/sdl.rda
data/sds.rda
inst/CITATION
man/CoverageSequenceData-class.Rd
man/EndSequenceData-class.Rd
man/ModInosine-functions.Rd
man/ModInosine-internals.Rd
man/ModInosine.Rd
man/Modifier-class.Rd
man/Modifier-functions.Rd
man/ModifierSet-class.Rd
man/NormEndSequenceData-class.Rd
man/PileupSequenceData-class.Rd
man/ProtectedEndSequenceData-class.Rd
man/RNAmodR-datasets.Rd
man/RNAmodR-development.Rd
man/RNAmodR-internals.Rd
man/RNAmodR-package.Rd
man/RNAmodR.Rd
man/SequenceData-class.Rd
man/SequenceData-functions.Rd
man/SequenceDataFrame-class.Rd
man/SequenceDataList-class.Rd
man/SequenceDataSet-class.Rd
man/SequenceModDNAStringSetTrack-class.Rd
man/SequenceModRNAStringSetTrack-class.Rd
man/aggregate.Rd
man/compareByCoord.Rd
man/modify.Rd
man/plotData.Rd
man/plotROC.Rd
man/settings.Rd
man/stats.Rd
man/subsetByCoord.Rd
pkgdown/_pkgdown.yml
tests/testthat.R
tests/testthat/test-0SequenceData.R
tests/testthat/test-0SequenceDataFrame.R
tests/testthat/test-0settings.R
tests/testthat/test-1SequenceDataSet.R
tests/testthat/test-2Modifier.R
tests/testthat/test-3normalization.R
tests/testthat/test-3subset.R
tests/testthat/test-3zcomparison.R
tests/testthat/test-4roc.R
tests/testthat/test-8visualization.R
tests/testthat/test-9show.R
vignettes/RNAmodR.Rmd
vignettes/RNAmodR.creation.Rmd
vignettes/RNAmodR.png
vignettes/RNAmodR.svg
vignettes/references.bib
