SequenceDataList-class: The SequenceDataList class

In FelixErnst/RNAmodR: Detection of post-transcriptional modifications in high throughput sequencing data

The SequenceDataList class

Description

The SequenceDataList class is used to hold SequenceData or SequenceDataSet objects as its elements. It is derived from the List class.

The SequenceDataList is used to hold data from different sets of aligned reads. This allows multiple methods to be aggregated into one modification detection strategy. Annotation and sequence data must be the same for all elements, however the bam files can be different.

Usage

SequenceDataList(...)

Arguments

...	The elements to be included in the SequenceDataList.

Value

a SequenceDataList

Examples

data(psd,package="RNAmodR")
data(e5sd,package="RNAmodR")
sdl <- SequenceDataList(SequenceDataSet(psd,e5sd),e5sd)

FelixErnst/RNAmodR documentation built on March 27, 2024, 2:42 a.m.