Man pages for FemeniasM/ExplorATEproject
Explore Active Transposable Elements from RNAseq data
| grapes-not-in-grapes | Value Non-Matching (inverse of %in% ) |
| idTEsProt | Genes related to transposable elements proteins used in the... |
| import.RTEs | Loads retrotransposons counts and return a DGEList object for... |
| mk.reference | Makes a reference file for Salmon |
| ovlp.res | Overlappings resolution |
| read.alignfile | Read .align file from RepeatMasker |
| readalin_sh | shell script to read .align and .align.gz files |
| read.gff3 | Read gff3 file |
| read.outfmt6 | Read outfmt6 file |
| read.RepMask | Read RepeatMasker output |
| rm.cotransRep | Excludes co-transcripted repeats |
| run.salmon | Run Salmon |
| split.vec | Split vector |
