read.gff3: Read gff3 file

In FemeniasM/ExplorATEproject: Explore Active Transposable Elements from RNAseq data

Read gff3 file

Description

reads a gff3 file from TransDecoder output

Usage

read.gff3(file)

Arguments

file

gff3 file

Details

This function read an gff3 file from TransDecoder output and rename columns as:

seqid

sequence ID

source

algorithm or operating procedure that generated the feature

feature

The type of the feature

strt

The start of the feature

end

The end of the feature

score

The score of the feature

st

strand (+ or -)

phase

For features of type "CDS", the phase indicates where the feature begins with reference to the reading frame.

att

attributes

FemeniasM/ExplorATEproject documentation built on Nov. 30, 2022, 5:26 p.m.