knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
library(signatureFlow)
data(phe);data(expr)
cleanData = clean(phe,expr)
library(survival)
featureNames=sample(as.vector(as.data.frame(expr[,1])),10)
uniCoxRes=NULL
for(i in featureNames){
  #i=featureNames[1]
  cox <- coxph(Surv(survivalTime,survivalStatus) ~ cleanData[,i], data = cleanData)
  coxSumm = summary(cox)
  uniCoxRes = cbind(uniCoxRes,simpleSummary(coxSumm))
}


Feng-Zhang/signatureFlow documentation built on Dec. 17, 2021, 8:26 p.m.