DataSpaceMab | R Documentation |
The DataSpaceMab class
The DataSpaceMab class
DataSpaceConnection$getMab()
config
A list. Stores configuration of the connection object such as URL, path and username.
studyAndMabs
A data.table. The table of available mAbs by study.
mabs
A data.table. The table of available mAbs and their attributes.
nabMab
A data.table. The table of mAbs and their neutralizing measurements against viruses.
studies
A data.table. The table of available studies.
assays
A data.table. The table of assay status by study.
variableDefinitions
A data.table. The table of variable definitions.
new()
Initialize DataSpaceMab
object.
See DataSpaceConnection
.
DataSpaceMab$new(mabMixture, filters, config)
mabMixture
A character vector.
filters
A list.
config
A list.
print()
Print the DataSpaceMab
object summary.
DataSpaceMab$print()
refresh()
Refresh the DataSpaceMab
object to update datasets.
DataSpaceMab$refresh()
getLanlMetadata()
Applies LANL metadata to mabs table.
DataSpaceMab$getLanlMetadata()
clone()
The objects of this class are cloneable with this method.
DataSpaceMab$clone(deep = FALSE)
deep
Whether to make a deep clone.
connectDS
DataSpaceConnection
## Not run: # Create a connection (Initiate a DataSpaceConnection object) con <- connectDS() # Browse the mAb Grid con$mabGridSummary # Filter the grid by viruses con$filterMabGrid(using = "virus", value = c("242-14", "Q23.17", "6535.3", "BaL.26", "DJ263.8")) # Filter the grid by donor species (llama) con$filterMabGrid(using = "donor_species", value = "llama") # Check the updated grid con$mabGridSummary # Retrieve available viruses in the filtered grid con$mabGrid[, unique(virus)] # Retrieve available clades for 1H9 mAb mixture in the filtered grid con$mabGrid[mab_mixture == "1H9", unique(clade)] # Create a DataSpaceMab object that contains the filtered mAb data mab <- con$getMab() mab # Inspect the `nabMab` field mab$nabMab ## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.