exampleData_ICS: Example ICS dataset

In FredHutch/VISCfunctions: VISC STP/SRA functions

Example ICS dataset

Description

A dataset containing response (0/1) and magnitude (continuous) ICS data for 3 cell populations and 2 antigen stimulations. Can be used to run VISCfunctions examples.

Usage

exampleData_ICS

Format

A data frame with 306 rows and 15 variables:

pubID

randomized subject ID

Group

study group

Visit

visit number: baseline, 1, and 2

Stim

antigen stimulation

Parent

T cell subset

Population

cell population

Count

cell count

ParentCount

parent cell count

CountBG

background cell count

ParentCountBG

parent background cell count

PercentCell

count / parent count

PercentCellNet

response magnitude: percent cell - background percent cell

response_prob

MIMOSA response probability

response_fdr_P

FDR-adjusted p-value

response

response call for percent cell net (0/1)

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FredHutch/VISCfunctions documentation built on Oct. 14, 2024, 11:33 p.m.