Man pages for FredHutch/tgR.data
Data Management Support for Fred Hutch Translational Genomics
| check_all_credentials | Checks for all correct credentials. |
| check_annot_credentials | Checks for correct dataset annotation credentials. |
| check_aws_credentials | Utility functions for the tgR.data package |
| check_s3meta_credentials | Checks for correct AWS S3 metadata credentials. |
| commit_data_provenance | Commits data provenance to REDCap about files in S3 with a... |
| commit_data_provenance_batch | Commits a batch of data provenance to REDCap about files in... |
| delete_file_entries | Permanently deletes data provenance in REDCap for files that... |
| dropWhen | Remove columns from data frames when all rows have specific... |
| get_all_deleted_files | Find all files that used to be in S3 that are marked for... |
| get_data_provenance | Find user supplied data provenance information about files in... |
| get_dataset_annotations | Queries for dataset annotations |
| get_deleted_files | Find files that used to be in S3 that are marked for deletion... |
| get_file_metadata | Find file metadata about files in S3 |
| mark_file_for_deletion | Marks files in REDCap that have been deleted from S3 |
| pipe | Pipe operator |
| set_credentials | Sets credentials from a file. |
| tag_and_commit_data_provenance | Commits data provenance to REDCap about files in S3 with a... |
| tag_file | Tags new files in S3 with a unique id |
| validate_dataset_id | Checks to ensure a dataset_id is not already used and is... |
| validate_uuid | Checks to ensure a uuid is not already used |
