STdiff_volcano: STdiff_volcano: Generates volcano plots from STdiff results

In FridleyLab/spatialGE: Visualization and Analysis of Spatial Heterogeneity in Spatially-Resolved Gene Expression

STdiff_volcano: Generates volcano plots from STdiff results

Description

Generates volcano plots of differential expression results from STdiff

Usage

STdiff_volcano(
  x = NULL,
  samples = NULL,
  clusters = NULL,
  pval_thr = 0.05,
  color_pal = NULL
)

Arguments

x	the output of STdiff
samples	samples to create plots
clusters	names of the clusters to generate comparisons
pval_thr	the p-value threshold to color genes with differential expression
color_pal	the palette to color genes by significance

Details

The function generated volcano plots (p-value vs. log-fold change) for genes tested with STdiff. Colors can be customized to show significance from spatial and non-spatial models

Value

a list of ggplot objects

FridleyLab/spatialGE documentation built on April 14, 2025, 9:37 a.m.