Files in FridleyLab/spatialTIME
Spatial Analysis of Vectra Immunoflourescent Data
.Rbuildignore
.Rprofile
.github/workflows/tic.yml
.github/workflows/update-tic.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
Meta/vignette.rds
NAMESPACE
R/bi_nn_g2.R
R/bi_pair_correlation.R
R/bi_ripleys_k.R
R/bi_ripleys_k_WSI.R
R/compute_metrics.R
R/create_mif.R
R/data-example-clinical.R
R/data-example-spatial.R
R/data-example-summary.R
R/dixons_s.R
R/global.R
R/interaction.R
R/merge_mifs.R
R/nn_g.R
R/pair_correlation.R
R/plot_immunoflo.R
R/print.R
R/ripleys_k.R
R/subset_mif.R
R/utils-helpers.R
R/utils-pipe.R
R/zzz.R
README.Rmd
README.md
R_dev/RcppExports.R
R_dev/bi_nn_g.R
R_dev/nearest_neighbor.R
R_dev/ripleys_k_auc.R
R_dev/ripleys_k_old.R
R_dev/utils-helpers-dev.R
data/example_clinical.rda
data/example_spatial.rda
data/example_summary.rda
dev/example_data_creation.Rmd
dev/example_data_creation.md
doc/deriving_functions.R
doc/deriving_functions.Rmd
doc/deriving_functions.html
doc/intro.R
doc/intro.Rmd
doc/intro.html
docs/.nojekyll
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/deriving_functions.html
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-10-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-11-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-4-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-5-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-6-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-7-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-8-1.png
docs/articles/deriving_functions_files/figure-html/unnamed-chunk-9-1.png
docs/articles/index.html
docs/articles/intro.html
docs/articles/intro_files/figure-html/NN-1.png
docs/articles/intro_files/figure-html/ripleys-1.png
docs/articles/intro_files/figure-html/ripleys_exact-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-11-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-12-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-3-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-4-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-5-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-6-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-7-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-8-1.png
docs/articles/intro_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/NN_G.html
docs/reference/Rplot001.png
docs/reference/bi_NN_G.html
docs/reference/bi_pair_correlation.html
docs/reference/bi_ripleys_k.html
docs/reference/compute_metrics.html
docs/reference/create_mif.html
docs/reference/dixons_s.html
docs/reference/example_clinical.html
docs/reference/example_spatial.html
docs/reference/example_summary.html
docs/reference/figures/hex_script.R
docs/reference/figures/logo.png
docs/reference/figures/tma_figure.png
docs/reference/index.html
docs/reference/interaction_variable.html
docs/reference/merge_mifs.html
docs/reference/pair_correlation.html
docs/reference/pipe.html
docs/reference/plot_immunoflo-1.png
docs/reference/plot_immunoflo.html
docs/reference/ripleys_k.html
docs/reference/subset_mif.html
inst/CITATION
man/NN_G.Rd
man/bi_NN_G.Rd
man/bi_pair_correlation.Rd
man/bi_ripleys_k.Rd
man/bi_ripleys_k_WSI.Rd
man/compute_metrics.Rd
man/create_mif.Rd
man/dixons_s.Rd
man/example_clinical.Rd
man/example_spatial.Rd
man/example_summary.Rd
man/figures/hex_script.R
man/figures/logo.png
man/figures/tma_figure.png
man/interaction_variable.Rd
man/merge_mifs.Rd
man/pair_correlation.Rd
man/pipe.Rd
man/plot_immunoflo.Rd
man/ripleys_k.Rd
man/subset_mif.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
spatialIHC.Rproj
tests/testthat.R
tests/testthat/test_creatMIF.R
tic.R
vignettes/.gitignore
vignettes/deriving_functions.Rmd
vignettes/intro.Rmd
