install.R

In Functional-Genomics/atlas_gsa: Expression Atlas Gene Set Overlap

#!/usr/bin/env Rscript
#; -*- mode: R;-*-
# =========================================================
#
# This is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
# 
# You should have received a copy of the GNU General Public License
# along with iRAP.  If not, see <http://www.gnu.org/licenses/>.
#
#
# =========================================================
# Install the R package
source("http://bioconductor.org/biocLite.R")
if (!require(devtools)) {
  biocLite("devtools")
}
library(devtools)
#install_github("Functional-Genomics/atlas_gsa/")

biocLite("parallel")
biocLite("bit")
biocLite("optparse")