Files in Fuschi/MetaGenomicR
What the Package Does (One Line, Title Case)
.Rbuildignore
.gitignore
DESCRIPTION
MetaGenomicR.Rproj
NAMESPACE
R/MetaGenomic-class.R
R/MetaGenomicGraph-class.R
R/MetaGenomicGraph-utility.R
R/hurdle-log-normal.R
R/load-dataset.R
R/utility.R
README.md
data-raw/1_DATASET_HMP2_16S.R
data-raw/2_DATASET_2DG.R
data-raw/3_Correct_taxa_species_2DG.R
data-raw/4_Unified_DATASET_2DG_WGS.R
data-raw/5_POMP_DO.R
data/count.2DG.WGS.rda
data/meta.2DG.rda
data/meta.HMP2.rda
data/meta_POMP_DO.rda
data/otu.2DG.16S.rda
data/otu.HMP2.16S.rda
data/otu_POMP_DO.rda
data/score.2DG.WGS.rda
data/taxa.2DG.WGS.rda
data/taxa.otu.2DG.16S.rda
data/taxa.otu.HMP2.16S.rda
data/taxa_POMP_DO.rda
exec/Communities_Detection.exe
inst/extdata/ben1_16s_otu_table.tsv.tsv
inst/extdata/ben1_16s_otu_taxa.tsv.tsv
inst/extdata/meta_2DG.txt
inst/extdata/meta_HMP2.csv
inst/extdata/otu_2DG_16S.tsv
inst/extdata/otu_HMP2_16S.csv
inst/extdata/pathseq.archaea.genus.readcount.txt
inst/extdata/pathseq.archaea.genus.score.txt
inst/extdata/pathseq.archaea.species.readcount.txt
inst/extdata/pathseq.archaea.species.score.txt
inst/extdata/pathseq.bacteria.genus.readcount.txt
inst/extdata/pathseq.bacteria.genus.score.txt
inst/extdata/pathseq.bacteria.species.readcount.txt
inst/extdata/pathseq.bacteria.species.score.txt
inst/extdata/pathseq.fungi.genus.readcount.txt
inst/extdata/pathseq.fungi.genus.score.txt
inst/extdata/pathseq.fungi.species.readcount.txt
inst/extdata/pathseq.fungi.species.score.txt
inst/extdata/pathseq.viruses.genus.readcount.txt
inst/extdata/pathseq.viruses.genus.score.txt
inst/extdata/pathseq.viruses.species.readcount.txt
inst/extdata/pathseq.viruses.species.score.txt
inst/extdata/taxa_otu_2DG_16S.tsv
inst/extdata/taxa_otu_HMP2_16S.csv
man/MetaGenomic-class.Rd
man/MetaGenomic.Rd
man/MetaGenomicGraph-class.Rd
man/MetaGenomicGraph.Rd
man/aggregate_taxa.Rd
man/arrange_taxa.Rd
man/arrange_vertices.Rd
man/clr.Rd
man/comm.Rd
man/communities_colormap.Rd
man/community_detection.Rd
man/data.Rd
man/default_decoration.Rd
man/density_link_threshold.Rd
man/get_gl_weights.Rd
man/get_mb_weights.Rd
man/is.MetaGenomic.Rd
man/layout_signed.Rd
man/load.2DG.16S.Rd
man/load.2DG.WGS.Rd
man/load.HMP2.Rd
man/load.POMP.DO.Rd
man/mdata.Rd
man/meta.Rd
man/netw.Rd
man/nrank.Rd
man/nsample.Rd
man/ntaxa.Rd
man/pairwise.Rd
man/ranks.Rd
man/remove.small.communities.Rd
man/sample_info.Rd
man/sample_name.Rd
man/sample_selection.Rd
man/sub-MetaGenomic-ANY-ANY-ANY-method.Rd
man/sub-MetaGenomicGraph-ANY-ANY-ANY-method.Rd
man/taxa.Rd
man/taxaID.Rd
man/taxa_filtering.Rd
man/taxa_name.Rd
man/taxonomy_colormap.Rd
man/tril.Rd
man/triu.Rd
man/unroll.Rd
man/vertex_membership.Rd
