taxa_filtering: Smart taxa filtering

In Fuschi/MetaGenomicR: What the Package Does (One Line, Title Case)

Smart taxa filtering

Description

Filter the rarest taxa based on the conditions imposed in the parameters.

Usage

taxa_filtering(
  obj,
  condition,
  prevalence,
  detection,
  median_non_zero,
  min_count,
  relative_abundance,
  perc_count_lost,
  keep_discarded
)

Arguments

obj	MetaGenomic object
condition	in progress
prevalence	in progress
detection	in progress
median_non_zero	in progress
relative_abundance	in progress
data	in progress

Value

MetaGenomic object with select taxa.

Fuschi/MetaGenomicR documentation built on Sept. 5, 2022, 5:23 a.m.