package: Full genome sequences for Medicago truncatula (JCVI version...

In G-Thomson/BSgenome.Mtruncatula: Full genome sequences for Medicago truncatula (JCVI version Mt4.0v1)

Description

Full genome sequences for Medicago truncatula (Barrel Medic) as provided by JCVI (Mt4.0v1, Apr. 2014) and stored in Biostrings objects.

Note

This BSgenome data package was made from the following source data files:

http://jcvi.org/medicago/display.php?pageName=General&section=Download
  

See ?BSgenomeForge and the BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Author(s)

The Bioconductor Dev Team

See Also

• BSgenome objects and the available.genomes function in the BSgenome software package.

• DNAString objects in the Biostrings package.

• The BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Examples

BSgenome.Mtruncatula.JCVI.Medtrv4
genome <- BSgenome.Mtruncatula.JCVI.Medtrv4
head(seqlengths(genome))


## ---------------------------------------------------------------------
## Genome-wide motif searching
## ---------------------------------------------------------------------
## See the GenomeSearching vignette in the BSgenome software
## package for some examples of genome-wide motif searching using
## Biostrings and the BSgenome data packages:
if (interactive())
    vignette("GenomeSearching", package="BSgenome")

G-Thomson/BSgenome.Mtruncatula documentation built on May 6, 2019, 5:08 p.m.