track_wiggle: Create a WiggleTrack for a custom JBrowse 2 view
In GMOD/JBrowseR: An R Interface to the JBrowse 2 Genome Browser
track_wiggle R Documentation
Create a WiggleTrack for a custom JBrowse 2 view
Description
Creates the necessary configuration string for a
bigWig file so that it can be used
in a JBrowse custom linear genome view.
Usage
track_wiggle(track_data, assembly)
Arguments
track_data
the URL to the bigWig file
assembly
the config string generated by assembly
Value
a character vector of stringified WiggleTrack JSON configuration
Examples
track_wiggle(
"https://jbrowse.org/genomes/hg19/COLO829/colo_normal.bw",
assembly("https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz", bgzip = TRUE)
)
GMOD/JBrowseR documentation built on March 16, 2024, 5:37 p.m.
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| track_wiggle | R Documentation |
Create a WiggleTrack for a custom JBrowse 2 view
Description
Creates the necessary configuration string for a bigWig file so that it can be used in a JBrowse custom linear genome view.
Usage
track_wiggle(track_data, assembly)
Arguments
track_data |
the URL to the bigWig file |
assembly |
the config string generated by |
Value
a character vector of stringified WiggleTrack JSON configuration
Examples
track_wiggle(
"https://jbrowse.org/genomes/hg19/COLO829/colo_normal.bw",
assembly("https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz", bgzip = TRUE)
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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