Description Usage Arguments Value
This function extracts the rhat values for the annual occupancy estimates for a set of species for a given region. The function loops through Bugs output files within a given location.
1 2 3 4 5 6 | RhatSummary(
indata = "../data/model_runs/",
output_path = "../rhat_summary/",
REGION_IN_Q = "psi.fs",
group_run = "article_17"
)
|
indata |
The file path to a location containing .rdata files of the bugs outputs, one for each species |
output_path |
The location where the output will be saved. |
REGION_IN_Q |
The region for which the rhat values will be extracted. UK based occupancy model examples include, 'psi.fs', 'psi.fs.r_GB', 'psi.fs.r_ENLGAND'. |
group_run |
The name of the group of species that were run. This is simply used for naming the save file |
An .rdata file containing the rhat values for all species for all years for the region in question.
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