RhatSummary: RhatSummary - Rhat Summary function

In GPowney/TrendSummaries: TrendSummaries - summarising occupancy model outputs

Description

This function extracts the rhat values for the annual occupancy estimates for a set of species for a given region. The function loops through Bugs output files within a given location.

Usage

RhatSummary(
  indata = "../data/model_runs/",
  output_path = "../rhat_summary/",
  REGION_IN_Q = "psi.fs",
  group_run = "article_17"
)

Arguments

indata	The file path to a location containing .rdata files of the bugs outputs, one for each species
output_path	The location where the output will be saved.
REGION_IN_Q	The region for which the rhat values will be extracted. UK based occupancy model examples include, 'psi.fs', 'psi.fs.r_GB', 'psi.fs.r_ENLGAND'.
group_run	The name of the group of species that were run. This is simply used for naming the save file

Value

An .rdata file containing the rhat values for all species for all years for the region in question.

GPowney/TrendSummaries documentation built on Nov. 15, 2021, 6:14 p.m.