R/GSEA.ReadCHIPFile.R

In GSEA-MSigDB/GSEA_R: Gene Set Enrichment Analysis (GSEA)

#' Read gene symbol mappings from .CHIP file
#'
#' `GSEA.ReadCHIPFile` is a wrapper for `read.table` with specified parameters for reading in a .CHIP file
#'
#' Internal `GSEA` function.
#'
#' @keywords internal
#'

GSEA.ReadCHIPFile <-
function(file = "NULL") {
chipframe <- read.table(file, sep = "\t", comment.char = "", quote = "", stringsAsFactors = FALSE,
  fill = TRUE, header = T)
return(chipframe)
}