BD.extent: Extension of BD framework for phylogenetic and functional...
In GabrielNakamura/Dimensionality_package: Package to compute dimensionality, alpha and beta measures of biodiversity
Description
Usage
Arguments
Value
View source: R/BD_extent_function.R
Description
Extension of BD framework for phylogenetic and functional beta diversity
Usage
1
BD.extent(Y, dist_spp, nperm = 999, method = "raw")
Arguments
Y
A matrix of species occurrence or abundance per site.
dist_spp
A matrix containing all trait or phylogenetic distances
(upper and lower diagonal elements) among species.
nperm
Scalar indicating the number of permutations to be used in taxa and site shuffle null-models.
method
Character. If "raw" the BD will be computed using directly matrix Y (with reliable transformation),
if "distance" BD will be computed by using distance matrix.
Value
A list containing the observed values of BD (BDextend.obs), LCBD (LCBDextend.obs), SCBD (if method
is raw) and the respective values of probability calculating accordingly to site shuffle null models (ptaxa.BDextend, ptaxa.LCBDextend)
GabrielNakamura/Dimensionality_package documentation built on Dec. 17, 2021, 9:27 p.m.
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Description Usage Arguments Value
View source: R/BD_extent_function.R
Description
Extension of BD framework for phylogenetic and functional beta diversity
Usage
1 | BD.extent(Y, dist_spp, nperm = 999, method = "raw")
|
Arguments
Y |
A matrix of species occurrence or abundance per site. |
dist_spp |
A matrix containing all trait or phylogenetic distances (upper and lower diagonal elements) among species. |
nperm |
Scalar indicating the number of permutations to be used in taxa and site shuffle null-models. |
method |
Character. If "raw" the BD will be computed using directly matrix Y (with reliable transformation), if "distance" BD will be computed by using distance matrix. |
Value
A list containing the observed values of BD (BDextend.obs), LCBD (LCBDextend.obs), SCBD (if method is raw) and the respective values of probability calculating accordingly to site shuffle null models (ptaxa.BDextend, ptaxa.LCBDextend)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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