f.internal: Internal auxiliar function to parallel process in mcfly

In GabrielNakamura/mcfly: Simulation framework to estimate the influence of niche adaptation rate and dispersal limitation on species diversity distribution across environmental gradients

Internal auxiliar function to parallel process in mcfly

Description

Internal auxiliar function to parallel process in mcfly

Usage

f.internal(
  k,
  sample.size.posterior,
  max.sample.size.prior,
  prior.alpha,
  prior.w,
  theta.val,
  phylo,
  niche.sigma,
  root.value,
  my.landscape,
  JM,
  n.timestep,
  spp.freq,
  niche.breadth,
  occurrence,
  spp.names,
  names.comm,
  entropy.order,
  div,
  tol,
  return.comm,
  scenario.ID,
  output.dir.path
)

Arguments

k	numeric, auxiliar parameter to paralell proccess
sample.size.posterior	numeric indicating the size of posterior distribution
max.sample.size.prior	numeric indicating the sie of prior distribution
prior.alpha	character indication the type of prior alpha same as mcfly
prior.w	logical indicating if the w must be estimated
theta.val	numeric theta value
phylo	phylogeny
niche.sigma	numeric indicating the sigma for nich
root.value	numeric indicating the mean value of traits
my.landscape	landscape
JM	total number of individuals in simulation process
n.timestep	number of timesteps in simulation process
spp.freq	frequency of species
niche.breadth	numeric indicating the niche breath of species
occurrence	logical
spp.names	names of species
names.comm	names for communities
entropy.order	diversity value accordingly to entropy order
div	diversity value
tol	tolerance value
return.comm	logical
scenario.ID	character
output.dir.path	character

Value

list with results to be used in mcfly function

GabrielNakamura/mcfly documentation built on July 27, 2023, 12:45 p.m.