extract_eigen: extract eigen-loci from co-methylation module
In Gavin-Yinld/coMethy: Co-methylation analysis to cluster the genomic loci with similar methylation pattern
Description
Usage
Arguments
Examples
View source: R/extract_eigen.R
Description
extract eigen-loci from co-methylation module
Usage
1
extract_eigen(csm.ml, all_label, number_of_eig)
Arguments
csm.ml
The methylation profile with each row denotes one loci and each column denotes a sample
all_label
A vector contains the module labels for all the loci
number_of_eig
Total number of eigen-loci need to be extracted
Examples
1
#eigen_loci <- extract_eigen(methy_data=module$profile,all_label=module$module_id,number_of_eig=100,plot=T)
Gavin-Yinld/coMethy documentation built on Aug. 23, 2019, 11:37 p.m.
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Description Usage Arguments Examples
View source: R/extract_eigen.R
Description
extract eigen-loci from co-methylation module
Usage
1 | extract_eigen(csm.ml, all_label, number_of_eig)
|
Arguments
csm.ml |
The methylation profile with each row denotes one loci and each column denotes a sample |
all_label |
A vector contains the module labels for all the loci |
number_of_eig |
Total number of eigen-loci need to be extracted |
Examples
1 | #eigen_loci <- extract_eigen(methy_data=module$profile,all_label=module$module_id,number_of_eig=100,plot=T)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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