stackepi: epistack example and test dataset
In GenEpi-GenPhySE/epistack: Heatmaps of Stack Profiles from Epigenetic Signals
stackepi R Documentation
epistack example and test dataset
Description
DNA methylation profiles (from MBD-seq data) arround transcription
start sites of the 693 chr18 genes annotated on the pig genome
(Sscrofa11.1), as well as gene expression levels in
Transcript Per Million (TPM) measured by RNA-seq in the same
duodenum sample.
Usage
data("stackepi")
Format
A RangedSummarizedExperiment of the 693 rows,
2 rows metadata columns, and one assay containing the DNA methylation
signal.
Source
This dataset was generated from ENSEMBL annotation data
and data generated by our lab (publicly available soon).
GenEpi-GenPhySE/epistack documentation built on July 27, 2023, 1:09 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| stackepi | R Documentation |
epistack example and test dataset
Description
DNA methylation profiles (from MBD-seq data) arround transcription start sites of the 693 chr18 genes annotated on the pig genome (Sscrofa11.1), as well as gene expression levels in Transcript Per Million (TPM) measured by RNA-seq in the same duodenum sample.
Usage
data("stackepi")
Format
A RangedSummarizedExperiment of the 693 rows,
2 rows metadata columns, and one assay containing the DNA methylation
signal.
Source
This dataset was generated from ENSEMBL annotation data and data generated by our lab (publicly available soon).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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