gecd_DeconvolutionCellMix: The gecd_DeconvolutionCellMix function

In GeneralElectric/CellDistinguisher: Computational de novo Discovery of Distinguishing Genes for Biological Processes and Cell Types in Complex Tissues

Description

gecd_DeconvolutionCellMix is a wrapper for the CellMix deconvolution tools. This is probably most useful with method="ssKL" and method="ssFrobenius".

Usage

gecd_DeconvolutionCellMix(exprLinear, bestDistinguishers,
  nonNegativeOnly = TRUE, verbose = 0, log = FALSE, ...)

Arguments

exprLinear	exprLinear is the matrix to be factored
bestDistinguishers	bestDistinguishers is the matrix of anchors that enable the factorization.
nonNegativeOnly	If set to TRUE strictly enforces that the entries in the matrix factors be non-negative. Default is TRUE.
verbose	Default is 0.
log	log parameter to be passed to the CellMix deconvolution tools. Default is FALSE.
...	Additional parameters to be passed to the CellMix deconvolution tools.

Examples

See https://github.com/GeneralElectric/CellDistinguisher/blob/master/README.txt

GeneralElectric/CellDistinguisher documentation built on May 18, 2020, 6:34 a.m.