Files in GeorgeLy7/DEGSimilar
A streamlined pipeline to compare DEGs via BLAST.
DEGSimilar.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/DEGSimilar-package.R
R/getBlastResults.R
R/graphBLASTResults.R
R/runDEGSimilar.R
README.Rmd
README.md
data-raw/Example.R
data-raw/GeneDataExample.csv
data-raw/exampleDatabase.fasta
data-raw/exampleDatabase.fasta.nhr
data-raw/exampleDatabase.fasta.nin
data-raw/exampleDatabase.fasta.nsq
data-raw/exampleQueryFasta.fasta
data/BlastResults2Max.rda
data/BlastResults5Max.rda
data/databaseFasta.rda
data/geneData.rda
data/queryFasta.rda
inst/CITATION
inst/extdata/Image1.png
inst/shiny-scripts/app.R
man/DEGSimilar-package.Rd
man/figures/README-example-1.png
man/figures/README-pressure-1.png
man/getBlastResults.Rd
man/graphBLASTResults.Rd
man/runDEGSimilar.Rd
tests/testthat.R
tests/testthat/GeneDataExample.csv
tests/testthat/exampleDatabase.fasta
tests/testthat/exampleDatabase.fasta.nhr
tests/testthat/exampleDatabase.fasta.nin
tests/testthat/exampleDatabase.fasta.nsq
tests/testthat/exampleQueryFasta.fasta
tests/testthat/test-getBlastResults.R
tests/testthat/test-graphBLASTResults.R
vignettes/.gitignore
vignettes/DEGSimilar.Rmd
vignettes/GeneDataExample.csv
vignettes/exampleDatabase.fasta
vignettes/exampleQueryFasta.fasta
