graphBLASTResults: Graphs BLAST Results from getBlastResults

In GeorgeLy7/DEGSimilar: A streamlined pipeline to compare DEGs via BLAST.

Description

A function that gets the BLAST hits of the submitted fasta file in the submitted fasta dabatase file. Creates a fasta database out of the user-submitted fastaDatabse file.

Usage

graphBLASTResults(
  blastResults,
  geneData,
  rowLabelScaling = 1,
  colLabelScaling = 1
)

Arguments

blastResults	A list containing fasta entries, must be generated from getBlastResults
geneData	A list or dataframe containing gene counts or log transformed gene count data
rowLabelScaling	An integer representing the scaling of the row labels, the higher the bigger the label will be
colLabelScaling	An integer representing the scaling of the column labels, the higher the bigger the label will be

Value

Returns a plot comparing the expression gene data of one more treatments of the genes in blastResults

Examples

# Example 1:
# Using the provided gene expression and blastResults files
# data(BlastResults5Max)
# data(geneData)
# graphBLASTResults(blastResults=BlastResults5Max, geneData=geneData)

GeorgeLy7/DEGSimilar documentation built on Dec. 31, 2020, 12:04 p.m.