B16CD8TILs_tpm: B16 CD8 Tumor-infiltrating T-cells from Singer et al 2016

In GfellerLab/TILAtlas: Tumor-infiltrating CD8+ T-cell state predictor for scRNA-seq data

Description

This dataset was used to train the logistic regression model and is provided as an example for testing. It is a subset (filtered genes and cells) of the Singer M scRNA-seq dataset available at NCBI GEO under accession GSE85947

Usage

B16CD8TILs_tpm

Format

An object of class data.frame with 2724 rows and 499 columns.

References

Singer M, Wang C, Cong L, Marjanovic ND et al. A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells. Cell 2016 Sep 8;166(6):1500-1511.e9. https://www.ncbi.nlm.nih.gov/pubmed/27610572

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85947

GfellerLab/TILAtlas documentation built on May 17, 2019, 8:03 a.m.