CytoKDEfeatures: Generic function that returns the CytoK Differentially...
In Ghoshlab/cytoKernel: Differential expression using kernel-based score test

CytoKDEfeatures

R Documentation

Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features

Description

Accessors for the 'CytoKDEfeatures' slot of a CytoK object.

Usage

CytoKDEfeatures(object)

## S4 method for signature 'CytoK'
CytoKDEfeatures(object)

Arguments

object

an object of class CytoK.

Value

The percent of differentially expressed features based on alpha (level of significance).

Examples

data <- cbind(matrix(rnorm(1200,mean=2, sd=1.5),
nrow=200, ncol=6), matrix(rnorm(1200,mean=5, sd=1.9),
nrow=200, ncol=6))
data_CytoK <- CytoK(object=data,
group_factor = rep(c(0,1), each=6), lowerRho=2,
upperRho=12,gridRho=4,alpha = 0.05,
featureVars = NULL)
CytoKDEfeatures(data_CytoK)

Ghoshlab/cytoKernel documentation built on Nov. 24, 2024, 9:17 a.m.