smokers: Smokers - PaIRKAT Example Data
In Ghoshlab/pairkat: PaIRKAT
Description
A synthetic data set of human subjects with phenotype variables related to
lung health among smokers. Subjects have associated metabolomics assay
data that are linked to KEGG pathway database IDs.
Usage
1
Format
A SummarizedExperiment S4 object containing the following components
phenotypeA dataframe containing phenotype variables and
outcomes of interest. Row names are subject IDs.
pathwaysA dataframe containing pathway database identifiers
(i.e. KEGG IDs). Row names are metabolite names
metabalomeA dataframe containing a metabolomics assay.
Row names are metabolite names and column names are subject IDs.
Ghoshlab/pairkat documentation built on Feb. 13, 2022, 6:15 a.m.
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Description
A synthetic data set of human subjects with phenotype variables related to lung health among smokers. Subjects have associated metabolomics assay data that are linked to KEGG pathway database IDs.
Usage
1 |
Format
A SummarizedExperiment S4 object containing the following components
phenotypeA dataframe containing phenotype variables and outcomes of interest. Row names are subject IDs.
pathwaysA dataframe containing pathway database identifiers (i.e. KEGG IDs). Row names are metabolite names
metabalomeA dataframe containing a metabolomics assay. Row names are metabolite names and column names are subject IDs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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