condprob_parmsvec: Creates vector of parameters for the conditional probability

In Giappo/mbd: Multiple Birth Death Diversification

Description

Creates vector of parameters for the conditional probability

Usage

condprob_parmsvec(pars, eq, lx, absorb, fortran = TRUE)

Arguments

pars	vector of parameters: pars[1] is lambda, the sympatric speciation rate; pars[2] is mu, the extinction rate; pars[3] is nu, the multiple allopatric speciation trigger rate; pars[4] is q, the single-lineage speciation probability;
eq	the equation approach you want to use. It can be "q_eq" for the Q-equation of "p_eq" for the P-equation.
lx	it is the number of ODEs considered for the computation.
absorb	set absorbing states when maximum number of allowed species is reached
fortran	Set it to TRUE if you want to use FORTRAN routine.

Value

a vector composed of (in order): lambda, mu, nu, components of the nu-q matrix, components of the matrix of columns (m1_mat), components of the matrix of rows (m2_mat), components of the empty framed matrix (empty_mat).

Author(s)

Giovanni Laudanno

Giappo/mbd documentation built on March 3, 2020, 3:36 a.m.