column_list: column_list

In GioBo/TR8: A Tool for Downloading Functional Traits Data for Plant Species

column_list

Description

A list containing a brief description of traits data retrieved by the various databases; it's used as a hash table by some internal tr8 functions.

Format

Each element contains a key which express the short name for the traits that TR8 can download and to each key a three-elements vector is associated, which contains a shorter code for the trait, a long description of the trait and the reference database

height_max

:c( "h_max","Maximum height","Ecoflora")

height_min

:c( "h_min","Minimum height","Ecoflora")

leaf_area

:c( "le_area","Leaf area","Ecoflora")

leaf_longevity

:c( "le_long","Leaf longevity","Ecoflora")

Photosynthetic_pathway

:c( "phot_path","Photosynthetic pathway","Ecoflora")

life_form

:c( "li_form","Life form","Ecoflora")

Vegetative_reprod_method

:c("reprod_meth","Vegetative reprod method","Ecoflora")

Flowering_earliest_month

:c("flw_early","Flowering earliest month","Ecoflora")

Flowering_latest_month

:c( "flw_late","Flowering latest month","Ecoflora")

Pollen_vector

:c( "poll_vect","Pollen vector","Ecoflora")

Seed_weight_mean

:c( "seed_wght","Seed weight mean","Ecoflora")

Method_of_propagation

:c( "propag","Method of propagation","Ecoflora")

Ellenberg_light_Eco

:c( "ell_light_uk","Ellenberg light","Ecoflora")

Ellenberg_moisture_Eco

:c( "ell_moist_uk","Ellenberg moisture","Ecoflora")

Ellenberg_pH_Eco

:c( "ell_pH_uk","Ellenberg pH","Ecoflora")

Ellenberg_nitrogen_Eco

:c( "ell_N","Ellenberg nitrogen","Ecoflora")

Ellenberg_salt_Eco

:c( "ell_S","Ellenberg salt","Ecoflora")

age_of_first_flowering

:c( "age_first_flowering","Age of first flowering","LEDA")

branching

:c( "branching","Branching","LEDA")

bud_bank_seasonality_soil

c( "bud_bank_seasonality_soil","Bud bank seasonality at soil level","LEDA")

buoyancy

:c( "buoyancy","Buoyancy","LEDA")

canopy_height

:c( "canopy_height","Mean canopy height","LEDA")

dispersal

:c( "dispersal","Dispersal type","LEDA")

leaf_distribution

:c( "leaf_distribution","Leaf distribution along the stem","LEDA")

leaf_dmc

:c( "leaf_dmc","Leaf dry matter content ","LEDA")

leaf_mass

:c( "leaf_mass","Leaf mass","LEDA")

leaf_size

:c( "leaf_size","Leaf size","LEDA")

dispersal_morphology

:c( "dispersal_morphology","Dispersal morphology","LEDA")

growth_form

:c( "growth_form","Growth form","LEDA")

life_span

:c( "life_span","Life span","LEDA")

releasing_height

:c( "releasing_height","Releasing height","LEDA")

sbank

:c( "sbank","Seed bank","LEDA")

seed_mass

:c( "seed_mass","Seed mass","LEDA")

shoot_growth_form

:c( "shoot_growth_form","Shoot growth form","LEDA")

seed_number_per_shoot

:c( "seed_number_per_shoot","Seed number per shoot","LEDA")

woodiness

:c( "woodiness","Woodiness","LEDA")

terminal_velocity

:c( "terminal_velocity","Terminal velocity","LEDA")

Life form

:c( "li_form_B","Life form","BiolFlor")

Life span

:c( "li_span","Life span","BiolFlor")

Rosettes

:c( "ros","Rosettes","BiolFlor")

Type of reproduction

:c( "reprod_B","Type of reproduction","BiolFlor")

Strategy type

:c( "strategy","Strategy type","BiolFlor")

Pollen vector

:c( "poll_vect_B","Pollen vector","BiolFlor")

L

:c( "ell_L_it","Ellenberg value for light in Italy","Pignatti")

T

:c( "ell_T_it","Ellenberg value for temperature in Italy","Pignatti")

C

:c( "ell_C_it","Ellenberg value for continentality in Italy","Pignatti")

U

:c( "ell_U_it","Ellenberg value for humidity in Italy","Pignatti")

R

:c( "ell_R_it","Ellenberg value for soil reaction in Italy","Pignatti")

N

:c( "ell_N_it","Ellenberg value for nitrogen in Italy","Pignatti")

S

:c( "ell_S_it","Ellenberg value for salinity in Italy","Pignatti")

life_form_P

:c( "life_form_P","Life form for Italian Flora","Pignatti")

corotipo

:c( "distribution_p","Distributions of species for the Italian Flora","Pignatti")

IT_beg_flow

:c( "IT_beg_flow","Beginning of flowering in Italy","Pignatti")

IT_end_flow

:c( "IT_end_flow","End of flowering in Italy","Pignatti")

Myco_infection

:c( "Myco_infection","Infection of AMF according to Akhmetzhanova et al.","AMF")

MycoFlor

:c( "MycoFlor","Infection of AMF according to MycoFlor","AMF")

inflorescence_fr

:c( "inflorescence_fr","Type of inflorescence","Catminat")

sex_reprod_fr

:c( "sex_reprod_fr","Type of sexual reproduction","Catminat")

poll_vect_fr

:c( "poll_vect_fr","Pollen vector","Catminat")

fruit_type_fr

:c( "fruit_type_fr","Type of fruit","Catminat")

dissemination_fr

:c( "dissemination_fr","Type of dissemination","Catminat")

flower_colour_fr

:c( "flower_colour_fr","Flower colour","Catminat")

ell_L_fr

:c( "ell_L_fr","Ellenberg values for Light","Catminat")

ell_T_fr

:c( "ell_T_fr","Ellenberg values for temperature","Catminat")

ell_C_fr

:c( "ell_C_fr","Ellenberg values for continentality","Catminat")

ell_U_atm_fr

:c( "ell_U_atm_fr","Ellenberg values for atmospheric moisture","Catminat")

ell_U_fr

:c( "ell_U_fr","Ellenberg values for moisture","Catminat")

ell_R_fr

:c( "ell_R_fr","Ellenberg values for soil reaction","Catminat")

ell_N_fr

:c( "ell_N_fr","Ellenberg values for nitrogen","Catminat")

ell_S_fr

:c( "ell_S_fr","Ellenberg values for salt","Catminat")

Soil_texture_fr

:c( "Soil_texture_fr","Type of soil texture","Catminat")

organic_matter_fr

:c( "organic_matter_fr","Organic matter in the soil","Catminat")

beg_flow_fr

:c( "beg_flow_fr","Beginning of flowering (month)","Catminat")

end_flow_fr

:c( "end_flow_fr","End of flowering (month)","Catminat")

Author(s)

Gionata Bocci <[e-mail]>

References

BiolFlor

Klotz, S., Kühn, I., Durka, W. (eds) (2002). BIOLFLOR - Eine Datenbank zu biologisch-ökologischen Merkmalen zur Flora von Deutschland. Schriftenreihe für Vegetationskunde *38*: 1-333. (Bundesamt für. Bonn, Bundesamt für Naturschutz)

Ecoflora

Fitter, A . H. and Peat , H. J. (1994). The Ecological Flora Database, J. Ecol., 82, 415-425. http://www.ecoflora.co.uk

LEDA traitbase Kleyer, M., Bekker, R.M., Knevel, I.C., Bakker, J.P, Thompson, K., Sonnenschein, M., Poschlod, P., Van Groenendael, J.M., Klimes, L., Klimesova, J., Klotz, S., Rusch, G.M., Hermy, M., Adriaens, D., Boedeltje, G., Bossuyt, B., Dannemann, A., Endels, P., Götzenberger, L., Hodgson, J.G., Jackel, A-K., Kühn, I., Kunzmann, D., Ozinga, W.A., Römermann, C., Stadler, M., Schlegelmilch, J., Steendam, H.J., Tackenberg, O., Wilmann, B., Cornelissen, J.H.C., Eriksson, O., Garnier, E., Peco, B. (2008). The LEDA Traitbase: A database of life-history traits of Northwest European flora. Journal of Ecology 96: 1266-1274.

Akhmetzhanova et al, 2012

Akhmetzhanova, A.A, Soudzilovskaia, N.A., Onipchenko, V.G., Cornwell, W. K., Agafonov, V. A., Selivanov, I.A., and Cornelissen, J. H. C. (2012): A rediscovered treasure: mycorrhizal intensity database for 3000 vascular plants species across the former Soviet Union. Ecology 93:689. URL: http://esapubs.org/Archive/ecol/E093/059/default.htm

Pignatti et al., 2005

Pignatti, S., Menegoni, P., Pietrosanti, S. (2005). Biondicazione attraverso le piante vascolari. Valori di indicazione secondo Ellenberg (Zeigerwerte) per le specie della Flora d'Italia. Braun-Blanquetia 39, Camerino, pp. 97.

Julve, 1998

Julve, P., 1998 ff. - Baseflor. Index botanique, écologique et chorologique de la flore de France. Version : 26 November 2014 . URL: http://perso.wanadoo.fr/philippe.julve/catminat.htm

BROT

Paula S, Arianoutsou M, Kazanis D, Tavsanoglu Ç, Lloret F, Buhk C, Ojeda F, Luna B, Moreno JM, Rodrigo A, Espelta JM, Palacio S, Fernández-Santos B, Fernandes PM, and Pausas JG. 2009. Fire-related traits for plant species of the Mediterranean Basin. Ecology 90: 1420.

AND

Paula S. & Pausas J.G. 2013. BROT: a plant trait database for Mediterranean Basin species. Version 2013.06. URL: http://www.uv.es/jgpausas/brot.htm

Examples

## inspect the structure of the list
str(column_list)

GioBo/TR8 documentation built on June 16, 2022, 9:10 p.m.