lipids-class: parsing the raw experimental data

Description Arguments

Description

This combines head with a number of columns

Arguments

filename

tsv filename

lipid_class

filter data by lipid class e.g. FFA or LPL

selected_chains

filter data by selected_chains e.g. 10:0 etc

treat_groups

filter data by treatment groups

columns

declare columns which contain experimental subject data e.g. M1, M2, etc for mouse 1 etc.

filter_method

apply outlier removal e.g. mf+replacemedian for median filtering and median replacment by default.

filter_cutoff

outlier removal cutoff which is 2 by default


GitShepard1/lipidtools documentation built on May 15, 2019, 10:47 a.m.