| belong | Title: Provide each elements from set B belongs to set... |
| Btree | Title: Create the Coefficients for Each Interior Knots Matrix |
| cv_T_group_fun | Title |
| f_fun | Title: Penalized log-likelihood for Dirichlet Tree... |
| Hessian | Title: Hessian matrix for Dirichlet and Multinomial models |
| IC_fun | Title Getting the information criteria |
| kfold.dismo | Title |
| lambda_fun | Title: Getting betas use the max(beta, 1) |
| lambda_raw_fun | Title: Grid methods to find which lambda minimize the loss |
| Loglik | Title: Likelihood function for Dirichlet and Multinomial... |
| Loglik_Dirichlet_tree | Title: Log likelihood for Dirichlet Tree |
| norm2 | Title L2 or other norms |
| pred_Y | Title Predicted values for Outcomes |
| QL_fun | Title: Gradient Descent Method for penalized likelihood this... |
| Score | Title: Score function for Dirichlet and Multinomial models |
| Score_Dirichlet_tree | Title: Score function for Dirichlet Tree |
| simulate_DM | Title: Simulate Dirichlet-Multinomial Regression Model |
| simulate_DMLM | Title simulate data for DMLMbvs model |
| simulate_DTM | Title: Simulate Dirichlet-Multinomial-Tree Regression Model |
| singlefold | Title |
| soft_fun | Title soft activation function |
| T_group_path | Title: Tree Path |
| treeinfo | Title: Extract Structural Information from a Phylo Tree |
| Xsim | Title: Simulate Design matrix and Indicators |
| Ytree | Title: Create the Outcomes for Each Interior Knots from the... |
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